HL_6DZP_058

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

6DZP|1|A|A|2492, 6DZP|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZP_058 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.1272

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6DZP|1|A|C|2488
6DZP|1|A|U|2489
6DZP|1|A|A|2490
6DZP|1|A|A|2491
6DZP|1|A|A|2492
6DZP|1|A|A|2493
6DZP|1|A|U|2494
6DZP|1|A|G|2495
6DZP|1|A|U|2496
6DZP|1|A|A|2497
6DZP|1|A|A|2498
6DZP|1|A|C|2499
6DZP|1|A|G|2500

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27