HL_6DZP_063

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

UGAGUGGAAG

Length

10 nucleotides

Bulged bases

6DZP|1|A|A|2630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZP_063 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.1571

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6DZP|1|A|U|2628
6DZP|1|A|G|2629
6DZP|1|A|A|2630
6DZP|1|A|G|2631
6DZP|1|A|U|2632
6DZP|1|A|G|2633
6DZP|1|A|G|2634
6DZP|1|A|A|2635
6DZP|1|A|A|2636
6DZP|1|A|G|2637

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15