HL_6DZP_078

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

UGUAAGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZP_078 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1646

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

6DZP|1|A|U|2548
6DZP|1|A|G|2549
6DZP|1|A|U|2550
6DZP|1|A|A|2551
6DZP|1|A|A|2552
6DZP|1|A|G|2553
6DZP|1|A|U|2554
6DZP|1|A|G|2555

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L5

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27