HL_6DZP_079
3D structure
- PDB id
- 6DZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.42 Å
Loop
- Sequence
- UGGAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 6DZP|1|A|G|2753
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DZP_079 not in the Motif Atlas
- Homologous match to HL_4WF9_057
- Geometric discrepancy: 0.1728
- The information below is about HL_4WF9_057
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_46665.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6DZP|1|A|U|2752
6DZP|1|A|G|2753
6DZP|1|A|G|2754
6DZP|1|A|A|2755
6DZP|1|A|G|2756
6DZP|1|A|C|2757
6DZP|1|A|A|2758
6DZP|1|A|G|2759
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain G
- 50S ribosomal protein L6
- Chain f
- 50S ribosomal protein L36
Coloring options: