HL_6DZP_080
3D structure
- PDB id
- 6DZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.42 Å
Loop
- Sequence
- GUCCCAUCCCGAACC
- Length
- 15 nucleotides
- Bulged bases
- 6DZP|1|B|C|42
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DZP_080 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.1846
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6DZP|1|B|G|35
6DZP|1|B|U|36
6DZP|1|B|C|37
6DZP|1|B|C|38
6DZP|1|B|C|39
6DZP|1|B|A|40
6DZP|1|B|U|41
6DZP|1|B|C|42
6DZP|1|B|C|43
6DZP|1|B|C|44
6DZP|1|B|G|45
6DZP|1|B|A|46
6DZP|1|B|A|47
6DZP|1|B|C|48
6DZP|1|B|C|49
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
- Chain P
- 50S ribosomal protein L18
- Chain g
- 50S ribosomal protein L31
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