Motif HL_50688.1 Version HL_50688.1 of this group appears in releases 3.91 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10		11		12		13		14	1-3	1-14	4-14	5-10	6-12	7-11	10-13
1	HL_8P9A_183	8P9A	0.0000	0	AS	5S rRNA	U	32	U	33	C	34	C	35	C	36	G	37	U	38	C	39	C	40	G	41	A	42	U	43	C	44	A	45	ncSH	cWW	cWS	cWW	tSH	tSH	tSW
2	HL_8C3A_228	8C3A	0.0915	0	3	5S rRNA	U	32	C	33	C	34	C	35	C	36	G	37	U	38	U	39	C	40	G	41	A	42	U	43	C	44	A	45	ncSH	cWW	cWS	cWW	ntSH	tSH	tSW

3D structures

Complete motif including flanking bases

Sequence	Counts
UUCCCGUCCGAUCA	1
UCCCCGUUCGAUCA	1

Non-Watson-Crick part of the motif

Sequence	Counts
UCCCGUCCGAUC	1
CCCCGUUCGAUC	1

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	New id, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (2)
Basepair signature: cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
Heat map statistics: Min 0.09 | Avg 0.05 | Max 0.09

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Coloring options: Nucleotide numbers

Motif HL_50688.1 Version HL_50688.1 of this group appears in releases 3.91 to 3.94 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_50688.1 Version HL_50688.1 of this group appears in releases 3.91 to 3.94

Download

Csv

Json