HL_6E84_004

3D structure

PDB id

6E84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Corn aptamer in complex with TO

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAGGAGGUC

Length

9 nucleotides

Bulged bases

6E84|1|A|A|24||||4_555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6E84_004 not in the Motif Atlas

Geometric match to HL_5BJO_002

Geometric discrepancy: 0.126

The information below is about HL_5BJO_002

Detailed Annotation

G-quadruplex fragment

Broad Annotation

No text annotation

Motif group

HL_57863.1

Basepair signature

cWW-F-F-cWH-cWH-F

Number of instances in this motif group

2

Unit IDs

6E84|1|A|G|20||||4_555
6E84|1|A|A|21||||4_555
6E84|1|A|G|22||||4_555
6E84|1|A|G|23||||4_555
6E84|1|A|A|24||||4_555
6E84|1|A|G|25||||4_555
6E84|1|A|G|26||||4_555
6E84|1|A|U|27||||4_555
6E84|1|A|C|28||||4_555

Current chains

Chain A

RNA (36-MER)

Nearby chains