HL_6EK0_004

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCGCGGCGGG

Length

11 nucleotides

Bulged bases

6EK0|1|L5|G|135, 6EK0|1|L5|C|136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EK0|1|L5|C|129
6EK0|1|L5|C|130
6EK0|1|L5|C|131
6EK0|1|L5|G|132
6EK0|1|L5|C|133
6EK0|1|L5|G|134
6EK0|1|L5|G|135
6EK0|1|L5|C|136
6EK0|1|L5|G|137
6EK0|1|L5|G|138
6EK0|1|L5|G|139

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37