6EK0 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6EK0_001 | 1/L5/37:44 | No text annotation | homologous HL_5TBW_001 NA | |
| HL_6EK0_002 | 1/L5/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6EK0_003 | 1/L5/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_6EK0_004 | 1/L5/129:139 | No text annotation | ||
| HL_6EK0_005 | 1/L5/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6EK0_006 | 1/L5/222:226 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6EK0_007 | 1/L5/230:238 | T-loop with unstacked turn | homologous HL_8CRE_007 NA | |
| HL_6EK0_008 | 1/L5/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_6EK0_009 | 1/L5/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_6EK0_119 | 1/L5/368:373 | GNRA | homologous HL_8P9A_122 HL_34789.5 | |
| HL_6EK0_120 | 1/L5/393:398 | GNRA | homologous HL_8CRE_011 NA | |
| HL_6EK0_015 | 1/L5/1170:1191 | No text annotation | ||
| HL_6EK0_121 | 1/L5/1252:1258 | No text annotation | ||
| HL_6EK0_122 | 1/L5/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_013 NA | |
| HL_6EK0_123 | 1/L5/1364:1373 | No text annotation | ||
| HL_6EK0_019 | 1/L5/1389:1394 | GNRA | homologous HL_8C3A_016 NA | |
| HL_6EK0_020 | 1/L5/1405:1412 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_6EK0_021 | 1/L5/1436:1448 | No text annotation | ||
| HL_6EK0_022 | 1/L5/1480:1484 | No text annotation | ||
| HL_6EK0_023 | 1/L5/1561:1566 | GNRA | homologous HL_5TBW_019 NA | |
| HL_6EK0_024 | 1/L5/1593:1602 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_6EK0_025 | 1/L5/1627:1635 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_6EK0_026 | 1/L5/1675:1680 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6EK0_027 | 1/L5/1753:1777 | No text annotation | ||
| HL_6EK0_028 | 1/L5/1816:1823 | No text annotation | homologous HL_5TBW_024 NA | |
| HL_6EK0_029 | 1/L5/1864:1870 | GNRA | homologous HL_8C3A_025 NA | |
| HL_6EK0_030 | 1/L5/1886:1893 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6EK0_124 | 1/L5/1957:2026 | No text annotation | ||
| HL_6EK0_031 | 1/L5/1969:2018 | No text annotation | ||
| HL_6EK0_033 | 1/L5/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6EK0_034 | 1/L5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_030 NA | |
| HL_6EK0_035 | 1/L5/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_6EK0_036 | 1/L5/2458:2463 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_6EK0_037 | 1/L5/2482:2496 | No text annotation | ||
| HL_6EK0_038 | 1/L5/2523:2532 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_6EK0_039 | 1/L5/2561:2566 | GNRA | geometric HL_3RG5_007 HL_34789.5 | |
| HL_6EK0_040 | 1/L5/2578:2583 | GNRA | homologous HL_5TBW_036 NA | |
| HL_6EK0_041 | 1/L5/2624:2632 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_6EK0_042 | 1/L5/2664:2670 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_6EK0_043 | 1/L5/2704:2712 | No text annotation | ||
| HL_6EK0_044 | 1/L5/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6EK0_045 | 1/L5/2792:2799 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_6EK0_046 | 1/L5/2810:2816 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6EK0_047 | 1/L5/2872:2877 | UNCG | homologous HL_8C3A_043 NA | |
| HL_6EK0_049 | 1/L5/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6EK0_050 | 1/L5/3639:3649 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_6EK0_051 | 1/L5/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6EK0_125 | 1/L5/3724:3729 | GNRA | homologous HL_8P9A_159 HL_34789.5 | |
| HL_6EK0_053 | 1/L5/3757:3767 | No text annotation | homologous HL_8CRE_047 NA | |
| HL_6EK0_054 | 1/L5/3796:3804 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_6EK0_055 | 1/L5/3873:3882 | No text annotation | homologous HL_8CRE_049 NA | |
| HL_6EK0_057 | 1/L5/4138:4146 | No text annotation | ||
| HL_6EK0_058 | 1/L5/4193:4201 | No text annotation | homologous HL_8CRE_053 NA | |
| HL_6EK0_059 | 1/L5/4210:4222 | No text annotation | homologous HL_8P9A_166 HL_02042.2 | |
| HL_6EK0_060 | 1/L5/4250:4258 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_6EK0_061 | 1/L5/4270:4277 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_6EK0_062 | 1/L5/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_6EK0_063 | 1/L5/4321:4326 | GNRA | homologous HL_5TBW_059 NA | |
| HL_6EK0_064 | 1/L5/4352:4362 | No text annotation | geometric HL_7JRT_001 HL_36265.1 | |
| HL_6EK0_065 | 1/L5/4417:4425 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_6EK0_066 | 1/L5/4474:4481 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6EK0_067 | 1/L5/4497:4503 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6EK0_068 | 1/L5/4540:4545 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6EK0_069 | 1/L5/4603:4608 | GNRA | homologous HL_8C3A_066 NA | |
| HL_6EK0_070 | 1/L5/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_6EK0_071 | 1/L5/4688:4702 | No text annotation | homologous HL_8CRE_066 NA | |
| HL_6EK0_073 | 1/L5/4907:4914 | No text annotation | geometric HL_2Y9H_003 HL_75660.9 | |
| HL_6EK0_074 | 1/L5/4975:4983 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_6EK0_075 | 1/L5/5021:5028 | No text annotation | geometric HL_1WZ2_007 HL_75660.9 | |
| HL_6EK0_126 | 1/L7/32:45 | No text annotation | homologous HL_8OI5_068 HL_01182.1 | |
| HL_6EK0_076 | 1/L7/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_6EK0_077 | 1/L7/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6EK0_078 | 1/L8/47:56 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_6EK0_079 | 1/L8/68:90 | No text annotation | ||
| HL_6EK0_080 | 1/L8/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6EK0_081 | 1/L8/121:129 | No text annotation | geometric HL_8Y0B_001 HL_69752.4 | |
| HL_6EK0_082 | 1/S2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6EK0_127 | 1/S2/63:85 | No text annotation | ||
| HL_6EK0_083 | 1/S2/69:80 | No text annotation | ||
| HL_6EK0_084 | 1/S2/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_6EK0_085 | 1/S2/194:205 | No text annotation | ||
| HL_6EK0_086 | 1/S2/288:295 | T-loop with 1 bulged base | geometric HL_4V88_191 NA | |
| HL_6EK0_087 | 1/S2/322:329 | No text annotation | geometric HL_5J7L_018 NA | |
| HL_6EK0_088 | 1/S2/377:387 | No text annotation | ||
| HL_6EK0_089 | 1/S2/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6EK0_090 | 1/S2/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_6EK0_091 | 1/S2/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_6EK0_092 | 1/S2/498:504 | No text annotation | homologous HL_4V88_197 NA | |
| HL_6EK0_093 | 1/S2/538:545 | No text annotation | geometric HL_361D_002 NA | |
| HL_6EK0_094 | 1/S2/569:581 | No text annotation | homologous HL_4V88_199 NA | |
| HL_6EK0_095 | 1/S2/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6EK0_097 | 1/S2/820:828 | No text annotation | homologous HL_4V88_203 NA | |
| HL_6EK0_098 | 1/S2/833:841 | No text annotation | ||
| HL_6EK0_099 | 1/S2/881:905 | No text annotation | ||
| HL_6EK0_100 | 1/S2/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6EK0_101 | 1/S2/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_6EK0_102 | 1/S2/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_6EK0_103 | 1/S2/1113:1120 | No text annotation | ||
| HL_6EK0_104 | 1/S2/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_6EK0_105 | 1/S2/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_6EK0_106 | 1/S2/1245:1254 | No text annotation | homologous HL_8P9A_215 HL_97521.2 | |
| HL_6EK0_107 | 1/S2/1295:1304 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_6EK0_108 | 1/S2/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_6EK0_109 | 1/S2/1366:1373 | T-loop related | geometric HL_4LFB_025 HL_63894.3 | |
| HL_6EK0_110 | 1/S2/1416:1424 | No text annotation | homologous HL_8CRE_220 HL_89167.3 | |
| HL_6EK0_111 | 1/S2/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
| HL_6EK0_112 | 1/S2/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_6EK0_113 | 1/S2/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6EK0_114 | 1/S2/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
| HL_6EK0_116 | 1/S2/1847:1852 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_6EK0_117 | 1/S6/31:39 | No text annotation | geometric HL_2ZNI_001 HL_75660.9 | |
| HL_6EK0_128 | 1/S6/50:64 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6EK0_010 | GNRA with extra cWW | ||
| HL_6EK0_011 | No text annotation | ||
| HL_6EK0_012 | No text annotation | ||
| HL_6EK0_013 | No text annotation | ||
| HL_6EK0_014 | No text annotation | ||
| HL_6EK0_016 | No text annotation | ||
| HL_6EK0_017 | No text annotation | ||
| HL_6EK0_018 | No text annotation | ||
| HL_6EK0_032 | No text annotation | ||
| HL_6EK0_048 | No text annotation | ||
| HL_6EK0_052 | No text annotation | ||
| HL_6EK0_056 | No text annotation | ||
| HL_6EK0_072 | No text annotation | ||
| HL_6EK0_096 | No text annotation | ||
| HL_6EK0_115 | No text annotation | ||
| HL_6EK0_118 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6EK0_001 | 1/L5/6:7, 1/L8/149:151 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_6EK0_002 | 1/L5/12:14, 1/L8/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_6EK0_003 | 1/L5/16:18, 1/L8/139:141 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.5 | |
| IL_6EK0_004 | 1/L5/26:27, 1/L5/55:57 | Single stack bend | homologous IL_5TBW_004 NA | |
| IL_6EK0_005 | 1/L5/30:37, 1/L5/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.2 | |
| IL_6EK0_006 | 1/L5/81:88, 1/L5/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_6EK0_007 | 1/L5/118:122, 1/L5/147:153 | No text annotation | ||
| IL_6EK0_008 | 1/L5/125:126, 1/L5/142:144 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_6EK0_261 | 1/L5/169:173, 1/L5/263:266 | No text annotation | ||
| IL_6EK0_010 | 1/L5/175:184, 1/L5/253:261 | No text annotation | ||
| IL_6EK0_262 | 1/L5/175:189, 1/L5/252:261 | No text annotation | ||
| IL_6EK0_011 | 1/L5/184:189, 1/L5/252:253 | No text annotation | ||
| IL_6EK0_012 | 1/L5/195:196, 1/L5/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_6EK0_013 | 1/L5/199:201, 1/L5/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_6EK0_014 | 1/L5/339:342, 1/L8/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_6EK0_015 | 1/L5/348:350, 1/L8/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_6EK0_016 | 1/L5/387:390, 1/L5/401:414 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_6EK0_017 | 1/L5/415:421, 1/L8/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_6EK0_018 | 1/L5/443:446, 1/L5/1300:1304 | No text annotation | geometric IL_4PHY_003 IL_49140.1 | |
| IL_6EK0_019 | 1/L5/448:450, 1/L5/1297:1298 | Single bulged C | geometric IL_4C7O_003 IL_05642.4 | |
| IL_6EK0_020 | 1/L5/459:460, 1/L5/695:697 | Single bulged C | geometric IL_3DIL_001 IL_05642.4 | |
| IL_6EK0_021 | 1/L5/462:464, 1/L5/691:693 | Isolated non-canonical cWW pair | geometric IL_4LFB_059 IL_01003.5 | |
| IL_6EK0_022 | 1/L5/466:472, 1/L5/682:689 | No text annotation | ||
| IL_6EK0_263 | 1/L5/482:485, 1/L5/671:672 | Multiple bulged bases | geometric IL_1R3E_001 IL_05670.1 | |
| IL_6EK0_024 | 1/L5/487:488, 1/L5/665:669 | Multiple bulged bases | geometric IL_8CRE_070 NA | |
| IL_6EK0_264 | 1/L5/491:505, 1/L5/653:662 | No text annotation | ||
| IL_6EK0_265 | 1/L5/508:510, 1/L5/649:650 | Single bulged A | geometric IL_1GID_009 NA | |
| IL_6EK0_027 | 1/L5/709:710, 1/L5/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_28408.3 | |
| IL_6EK0_028 | 1/L5/723:724, 1/L5/942:945 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_6EK0_029 | 1/L5/727:731, 1/L5/938:939 | No text annotation | ||
| IL_6EK0_030 | 1/L5/732:735, 1/L5/928:937 | No text annotation | ||
| IL_6EK0_031 | 1/L5/737:740, 1/L5/925:926 | No text annotation | ||
| IL_6EK0_032 | 1/L5/740:742, 1/L5/922:925 | No text annotation | ||
| IL_6EK0_033 | 1/L5/745:752, 1/L5/911:919 | No text annotation | geometric IL_5TBW_020 NA | |
| IL_6EK0_266 | 1/L5/745:754, 1/L5/909:919 | No text annotation | ||
| IL_6EK0_035 | 1/L5/1073:1074, 1/L5/1237:1239 | Single bulged A | geometric IL_4R4V_003 IL_14190.3 | |
| IL_6EK0_037 | 1/L5/1082:1084, 1/L5/1213:1217 | Isolated cWH basepair | geometric IL_6IA2_003 IL_10892.3 | |
| IL_6EK0_038 | 1/L5/1086:1087, 1/L5/1209:1211 | Single bulged C | geometric IL_3W3S_001 IL_05642.4 | |
| IL_6EK0_039 | 1/L5/1093:1094, 1/L5/1201:1203 | No text annotation | ||
| IL_6EK0_267 | 1/L5/1093:1096, 1/L5/1199:1203 | No text annotation | geometric IL_8BH9_001 IL_65740.2 | |
| IL_6EK0_040 | 1/L5/1094:1096, 1/L5/1199:1201 | Isolated non-canonical cWW contact | geometric IL_5UNE_009 IL_87720.2 | |
| IL_6EK0_041 | 1/L5/1244:1246, 1/L5/1264:1267 | Isolated cWH basepair | geometric IL_3R1C_011 IL_10892.3 | |
| IL_6EK0_043 | 1/L5/1357:1360, 1/L5/1379:1382 | No text annotation | ||
| IL_6EK0_268 | 1/L5/1357:1361, 1/L5/1376:1382 | No text annotation | ||
| IL_6EK0_044 | 1/L5/1360:1361, 1/L5/1376:1379 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.4 | |
| IL_6EK0_045 | 1/L5/1425:1429, 1/L5/1455:1460 | No text annotation | geometric IL_3BBM_001 IL_47352.3 | |
| IL_6EK0_046 | 1/L5/1431:1434, 1/L5/1450:1453 | Double sheared | geometric IL_4WF9_087 IL_58355.3 | |
| IL_6EK0_047 | 1/L5/1467:1468, 1/L5/1496:1498 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_6EK0_048 | 1/L5/1474:1476, 1/L5/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_6EK0_049 | 1/L5/1479:1480, 1/L5/1484:1486 | Single bulged C | geometric IL_5J7L_311 NA | |
| IL_6EK0_269 | 1/L5/1520:1522, 1/L5/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 IL_01003.5 | |
| IL_6EK0_270 | 1/L5/1522:1526, 1/L5/1648:1655 | No text annotation | homologous IL_8P9A_256 IL_73855.2 | |
| IL_6EK0_051 | 1/L5/1545:1546, 1/L5/1612:1614 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_6EK0_052 | 1/L5/1550:1551, 1/L5/1576:1578 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_6EK0_053 | 1/L5/1551:1555, 1/L5/1572:1576 | Triple sheared | homologous IL_8CRE_033 NA | |
| IL_6EK0_271 | 1/L5/1586:1589, 1/L5/1605:1607 | No text annotation | homologous IL_8CRE_034 NA | |
| IL_6EK0_055 | 1/L5/1590:1592, 1/L5/1603:1604 | Single bulged U | geometric IL_5TBW_032 NA | |
| IL_6EK0_056 | 1/L5/1624:1626, 1/L5/1636:1640 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_6EK0_057 | 1/L5/1671:1673, 1/L5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_6EK0_058 | 1/L5/1686:1688, 1/L5/1848:1851 | No text annotation | ||
| IL_6EK0_060 | 1/L5/1723:1725, 1/L5/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6EK0_272 | 1/L5/1732:1737, 1/L5/1792:1797 | No text annotation | ||
| IL_6EK0_062 | 1/L5/1737:1738, 1/L5/1790:1792 | Minor groove platform | homologous IL_5TBW_039 NA | |
| IL_6EK0_063 | 1/L5/1739:1744, 1/L5/1786:1789 | C-loop | homologous IL_5TBW_040 NA | |
| IL_6EK0_064 | 1/L5/1746:1749, 1/L5/1781:1784 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_6EK0_065 | 1/L5/1749:1751, 1/L5/1779:1781 | Isolated non-canonical cWW pair | homologous IL_5TBW_042 NA | |
| IL_6EK0_066 | 1/L5/1814:1816, 1/L5/1823:1824 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_6EK0_273 | 1/L5/1858:1860, 1/L5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8CRE_049 NA | |
| IL_6EK0_275 | 1/L5/1905:1909, 1/L5/2067:2071 | UAA/GAN | homologous IL_8CRE_051 NA | |
| IL_6EK0_070 | 1/L5/1911:1918, 1/L5/2064:2065 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_6EK0_071 | 1/L5/1918:1920, 1/L5/2063:2064 | Single bulged G | geometric IL_8TSV_002 IL_28408.3 | |
| IL_6EK0_072 | 1/L5/1920:1922, 1/L5/2062:2063 | No text annotation | ||
| IL_6EK0_073 | 1/L5/1926:1933, 1/L5/2053:2058 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_6EK0_074 | 1/L5/1933:1944, 1/L5/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6EK0_075 | 1/L5/1946:1948, 1/L5/2035:2036 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_6EK0_076 | 1/L5/1957:1969, 1/L5/2018:2026 | No text annotation | ||
| IL_6EK0_077 | 1/L5/2083:2085, 1/L5/2272:2273 | Single bulged C | geometric IL_4C7O_003 IL_05642.4 | |
| IL_6EK0_078 | 1/L5/2290:2292, 1/L5/2342:2345 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_6EK0_080 | 1/L5/2299:2301, 1/L5/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_6EK0_081 | 1/L5/2302:2309, 1/L5/2329:2333 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_6EK0_082 | 1/L5/2312:2314, 1/L5/2325:2326 | Single bulged A | geometric IL_5WWT_001 IL_14190.3 | |
| IL_6EK0_276 | 1/L5/2358:2364, 1/L5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8CRE_065 NA | |
| IL_6EK0_083 | 1/L5/2415:2419, 1/L5/2427:2429 | C-loop | geometric IL_7A0S_047 IL_06671.2 | |
| IL_6EK0_084 | 1/L5/2446:2450, 1/L5/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6EK0_085 | 1/L5/2477:2480, 1/L5/2498:2500 | Isolated non-canonical cWW pair | geometric IL_1XJR_003 IL_01003.5 | |
| IL_6EK0_277 | 1/L5/2477:2482, 1/L5/2496:2500 | No text annotation | ||
| IL_6EK0_087 | 1/L5/2542:2547, 1/L5/2772:2774 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_42997.6 | |
| IL_6EK0_088 | 1/L5/2549:2550, 1/L5/2768:2770 | Single bulged U | geometric IL_2R8S_004 IL_97561.6 | |
| IL_6EK0_089 | 1/L5/2589:2593, 1/L5/2752:2756 | Triple sheared | homologous IL_8P9A_295 IL_15190.3 | |
| IL_6EK0_090 | 1/L5/2613:2614, 1/L5/2724:2726 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_6EK0_091 | 1/L5/2614:2615, 1/L5/2722:2724 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6EK0_092 | 1/L5/2646:2648, 1/L5/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.3 | |
| IL_6EK0_093 | 1/L5/2651:2653, 1/L5/2681:2682 | Single bulged G | geometric IL_3NDB_004 NA | |
| IL_6EK0_094 | 1/L5/2656:2662, 1/L5/2672:2678 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6EK0_095 | 1/L5/2832:2838, 1/L5/3850:3853 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_6EK0_096 | 1/L5/2844:2846, 1/L5/3842:3844 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6EK0_097 | 1/L5/2847:2850, 1/L5/3840:3841 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_6EK0_278 | 1/L5/2847:2855, 1/L5/3837:3841 | No text annotation | homologous IL_8CRE_082 NA | |
| IL_6EK0_098 | 1/L5/2850:2855, 1/L5/3837:3840 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_6EK0_099 | 1/L5/2867:2872, 1/L5/2877:2883 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_20700.2 | |
| IL_6EK0_100 | 1/L5/2889:2891, 1/L5/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6EK0_101 | 1/L5/2896:2897, 1/L5/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6EK0_279 | 1/L5/2901:2907, 1/L5/3588:3598 | No text annotation | ||
| IL_6EK0_103 | 1/L5/3632:3633, 1/L5/3827:3829 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_6EK0_104 | 1/L5/3660:3665, 1/L5/3677:3684 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6EK0_105 | 1/L5/3700:3703, 1/L5/3749:3750 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_6EK0_106 | 1/L5/3704:3705, 1/L5/3745:3748 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_6EK0_107 | 1/L5/3708:3710, 1/L5/3741:3742 | Single stack bend | geometric IL_7KGA_003 IL_15011.4 | |
| IL_6EK0_108 | 1/L5/3710:3714, 1/L5/3739:3741 | No text annotation | homologous IL_8C3A_092 NA | |
| IL_6EK0_280 | 1/L5/3715:3721, 1/L5/3732:3738 | No text annotation | homologous IL_8P9A_316 IL_65359.2 | |
| IL_6EK0_110 | 1/L5/3780:3781, 1/L5/3811:3814 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_6EK0_281 | 1/L5/3781:3792, 1/L5/3808:3811 | No text annotation | homologous IL_8CRE_095 NA | |
| IL_6EK0_112 | 1/L5/3895:3898, 1/L5/4563:4565 | No text annotation | homologous IL_8P9A_319 IL_75527.3 | |
| IL_6EK0_114 | 1/L5/3900:3902, 1/L5/4558:4561 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_6EK0_115 | 1/L5/3913:3915, 1/L5/4388:4389 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6EK0_116 | 1/L5/3916:3917, 1/L5/4384:4387 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6EK0_118 | 1/L5/3927:3929, 1/L5/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_6EK0_120 | 1/L5/4082:4088, 1/L5/4161:4164 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_6EK0_282 | 1/L5/4091:4129, 1/L5/4155:4158 | No text annotation | ||
| IL_6EK0_122 | 1/L5/4191:4192, 1/L5/4202:4204 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_6EK0_123 | 1/L5/4243:4245, 1/L5/4263:4267 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_6EK0_283 | 1/L5/4291:4293, 1/L5/4317:4318 | No text annotation | ||
| IL_6EK0_125 | 1/L5/4295:4298, 1/L5/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_8P9A_327 IL_15225.3 | |
| IL_6EK0_126 | 1/L5/4347:4350, 1/L5/4364:4365 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6EK0_284 | 1/L5/4400:4401, 1/L5/4442:4444 | Major groove platform | homologous IL_8P9A_329 IL_48076.9 | |
| IL_6EK0_285 | 1/L5/4401:4405, 1/L5/4439:4442 | No text annotation | homologous IL_8CRE_111 NA | |
| IL_6EK0_128 | 1/L5/4405:4407, 1/L5/4435:4439 | Major groove minor groove platform with extra cWW | homologous IL_5TBW_105 NA | |
| IL_6EK0_129 | 1/L5/4412:4416, 1/L5/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6EK0_130 | 1/L5/4453:4454, 1/L5/4526:4528 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_6EK0_131 | 1/L5/4456:4458, 1/L5/4520:4524 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_6EK0_132 | 1/L5/4458:4459, 1/L5/4517:4520 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_6EK0_133 | 1/L5/4466:4468, 1/L5/4489:4491 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_6EK0_286 | 1/L5/4466:4470, 1/L5/4485:4491 | No text annotation | ||
| IL_6EK0_134 | 1/L5/4468:4470, 1/L5/4485:4489 | No text annotation | ||
| IL_6EK0_136 | 1/L5/4495:4497, 1/L5/4503:4505 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_6EK0_137 | 1/L5/4537:4538, 1/L5/4547:4549 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_6EK0_138 | 1/L5/4580:4582, 1/L5/4721:4723 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_6EK0_139 | 1/L5/4582:4585, 1/L5/4717:4721 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_6EK0_287 | 1/L5/4590:4592, 1/L5/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_71625.4 | |
| IL_6EK0_140 | 1/L5/4596:4603, 1/L5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_6EK0_142 | 1/L5/4624:4629, 1/L5/4669:4673 | No text annotation | ||
| IL_6EK0_288 | 1/L5/4632:4637, 1/L5/4662:4666 | No text annotation | homologous IL_8P9A_346 IL_98200.2 | |
| IL_6EK0_144 | 1/L5/4638:4640, 1/L5/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10892.3 | |
| IL_6EK0_145 | 1/L5/4641:4642, 1/L5/4655:4658 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_6EK0_146 | 1/L5/4680:4685, 1/L5/4705:4710 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_6EK0_289 | 1/L5/4740:4742, 1/L5/4958:4959 | No text annotation | ||
| IL_6EK0_148 | 1/L5/4743:4746, 1/L5/4954:4957 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 NA | |
| IL_6EK0_149 | 1/L5/4749:4751, 1/L5/4948:4951 | No text annotation | ||
| IL_6EK0_150 | 1/L5/4756:4765, 1/L5/4869:4877 | No text annotation | ||
| IL_6EK0_151 | 1/L5/4769:4771, 1/L5/4863:4865 | No text annotation | geometric IL_7RQB_083 NA | |
| IL_6EK0_152 | 1/L5/4885:4888, 1/L5/4931:4934 | Tandem non-canonical cWW pairs | geometric IL_4K27_003 IL_71194.3 | |
| IL_6EK0_153 | 1/L5/4890:4896, 1/L5/4924:4929 | No text annotation | ||
| IL_6EK0_290 | 1/L5/4899:4901, 1/L5/4920:4921 | No text annotation | ||
| IL_6EK0_155 | 1/L5/4972:4975, 1/L5/4983:4986 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_6EK0_156 | 1/L5/4992:4994, 1/L5/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3IVK_002 IL_01003.5 | |
| IL_6EK0_157 | 1/L5/4996:4997, 1/L5/5053:5055 | Single bulged C | geometric IL_1KUQ_002 IL_05642.4 | |
| IL_6EK0_158 | 1/L5/5000:5002, 1/L5/5045:5050 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_6EK0_159 | 1/L5/5003:5009, 1/L5/5039:5044 | No text annotation | ||
| IL_6EK0_160 | 1/L5/5012:5017, 1/L5/5032:5036 | No text annotation | ||
| IL_6EK0_161 | 1/L7/15:16, 1/L7/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6EK0_162 | 1/L7/21:27, 1/L7/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_6EK0_291 | 1/L7/28:29, 1/L7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_6EK0_164 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_6EK0_165 | 1/L7/71:78, 1/L7/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_6EK0_166 | 1/L7/79:81, 1/L7/95:97 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 NA | |
| IL_6EK0_167 | 1/L7/82:85, 1/L7/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6EK0_168 | 1/L8/64:66, 1/L8/92:95 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA | |
| IL_6EK0_169 | 1/S2/23:25, 1/S2/649:651 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_01003.5 | |
| IL_6EK0_171 | 1/S2/34:36, 1/S2/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_6EK0_172 | 1/S2/37:40, 1/S2/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.3 | |
| IL_6EK0_173 | 1/S2/41:47, 1/S2/479:481 | No text annotation | homologous IL_4V88_387 NA | |
| IL_6EK0_174 | 1/S2/49:51, 1/S2/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6EK0_175 | 1/S2/57:62, 1/S2/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_6EK0_176 | 1/S2/63:69, 1/S2/80:85 | No text annotation | geometric IL_2NPY_001 IL_47352.3 | |
| IL_6EK0_177 | 1/S2/108:110, 1/S2/351:353 | Isolated non-canonical cWW pair | geometric IL_1ZX7_004 NA | |
| IL_6EK0_178 | 1/S2/110:112, 1/S2/349:351 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_01003.5 | |
| IL_6EK0_179 | 1/S2/112:115, 1/S2/348:349 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_6EK0_292 | 1/S2/116:121, 1/S2/343:347 | No text annotation | homologous IL_8P9A_382 IL_31545.2 | |
| IL_6EK0_181 | 1/S2/123:124, 1/S2/339:341 | Minor groove platform | geometric IL_4UYK_001 IL_34520.4 | |
| IL_6EK0_293 | 1/S2/145:151, 1/S2/167:174 | No text annotation | homologous IL_8CRE_400 IL_24485.2 | |
| IL_6EK0_294 | 1/S2/152:154, 1/S2/164:166 | No text annotation | homologous IL_8P9A_384 IL_87720.2 | |
| IL_6EK0_185 | 1/S2/188:192, 1/S2/207:211 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_6EK0_186 | 1/S2/216:219, 1/S2/302:309 | No text annotation | ||
| IL_6EK0_188 | 1/S2/312:314, 1/S2/336:337 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_6EK0_189 | 1/S2/317:319, 1/S2/332:333 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_6EK0_190 | 1/S2/359:364, 1/S2/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6EK0_191 | 1/S2/366:371, 1/S2/393:394 | No text annotation | geometric IL_5Y58_001 IL_37738.1 | |
| IL_6EK0_192 | 1/S2/411:413, 1/S2/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6EK0_193 | 1/S2/437:439, 1/S2/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_6EK0_194 | 1/S2/459:461, 1/S2/468:470 | Isolated non-canonical cWW pair | homologous IL_4V88_406 NA | |
| IL_6EK0_195 | 1/S2/487:489, 1/S2/511:512 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_6EK0_295 | 1/S2/491:495, 1/S2/508:509 | C-loop | homologous IL_8P9A_397 IL_26900.2 | |
| IL_6EK0_296 | 1/S2/495:496, 1/S2/506:508 | Single bulged G | homologous IL_8P9A_398 IL_28408.3 | |
| IL_6EK0_197 | 1/S2/530:534, 1/S2/549:555 | No text annotation | ||
| IL_6EK0_297 | 1/S2/535:537, 1/S2/546:548 | Multiple bulged bases | geometric IL_5M0H_004 IL_71421.4 | |
| IL_6EK0_298 | 1/S2/566:569, 1/S2/581:584 | No text annotation | geometric IL_7LO9_003 NA | |
| IL_6EK0_200 | 1/S2/599:606, 1/S2/636:637 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_6EK0_201 | 1/S2/606:608, 1/S2/635:636 | Single bulged U | homologous IL_4V88_414 NA | |
| IL_6EK0_202 | 1/S2/611:617, 1/S2/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_6EK0_203 | 1/S2/663:665, 1/S2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.5 | |
| IL_6EK0_204 | 1/S2/665:671, 1/S2/1161:1162 | No text annotation | homologous IL_4V88_416 NA | |
| IL_6EK0_205 | 1/S2/673:675, 1/S2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6EK0_206 | 1/S2/676:680, 1/S2/1025:1029 | tSH-tWH-tHS | homologous IL_4V88_418 NA | |
| IL_6EK0_207 | 1/S2/802:803, 1/S2/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_6EK0_208 | 1/S2/805:807, 1/S2/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_6EK0_299 | 1/S2/807:815, 1/S2/849:856 | No text annotation | homologous IL_8CRE_430 IL_59049.3 | |
| IL_6EK0_210 | 1/S2/874:876, 1/S2/910:912 | Isolated non-canonical cWW pair | geometric IL_5Y85_006 IL_01003.5 | |
| IL_6EK0_211 | 1/S2/877:879, 1/S2/907:909 | Isolated non-canonical cWW pair | geometric IL_5J7L_061 NA | |
| IL_6EK0_300 | 1/S2/877:881, 1/S2/905:909 | Partly complementary | geometric IL_7VYX_004 IL_71154.4 | |
| IL_6EK0_212 | 1/S2/922:923, 1/S2/1019:1022 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_6EK0_301 | 1/S2/925:926, 1/S2/1015:1017 | Single bulged U | geometric IL_8P9A_281 IL_97561.6 | |
| IL_6EK0_214 | 1/S2/928:931, 1/S2/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_4V88_430 NA | |
| IL_6EK0_215 | 1/S2/931:935, 1/S2/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_6EK0_216 | 1/S2/942:945, 1/S2/981:984 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_6EK0_217 | 1/S2/952:956, 1/S2/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_6EK0_218 | 1/S2/1042:1047, 1/S2/1071:1073 | Other IL | homologous IL_4V88_435 NA | |
| IL_6EK0_219 | 1/S2/1047:1051, 1/S2/1067:1071 | tSH-tWH-tHS | geometric IL_5J7L_037 NA | |
| IL_6EK0_220 | 1/S2/1091:1093, 1/S2/1152:1158 | No text annotation | homologous IL_4V88_437 NA | |
| IL_6EK0_221 | 1/S2/1098:1101, 1/S2/1131:1134 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_6EK0_222 | 1/S2/1101:1103, 1/S2/1129:1131 | Isolated non-canonical cWW pair | geometric IL_4V9F_105 IL_01003.5 | |
| IL_6EK0_223 | 1/S2/1108:1110, 1/S2/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_6EK0_224 | 1/S2/1168:1175, 1/S2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_6EK0_225 | 1/S2/1203:1204, 1/S2/1694:1696 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_6EK0_226 | 1/S2/1206:1208, 1/S2/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_6EK0_227 | 1/S2/1214:1217, 1/S2/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
| IL_6EK0_228 | 1/S2/1230:1232, 1/S2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_6EK0_229 | 1/S2/1235:1236, 1/S2/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6EK0_230 | 1/S2/1270:1272, 1/S2/1510:1512 | Isolated non-canonical cWW pair | homologous IL_4V88_446 NA | |
| IL_6EK0_302 | 1/S2/1282:1287, 1/S2/1314:1315 | No text annotation | ||
| IL_6EK0_303 | 1/S2/1282:1290, 1/S2/1309:1315 | No text annotation | ||
| IL_6EK0_232 | 1/S2/1287:1290, 1/S2/1309:1314 | No text annotation | ||
| IL_6EK0_233 | 1/S2/1291:1293, 1/S2/1306:1308 | No text annotation | homologous IL_4V88_448 NA | |
| IL_6EK0_234 | 1/S2/1325:1327, 1/S2/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_6EK0_235 | 1/S2/1329:1333, 1/S2/1498:1500 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.2 | |
| IL_6EK0_304 | 1/S2/1329:1335, 1/S2/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_99893.2 | |
| IL_6EK0_236 | 1/S2/1333:1335, 1/S2/1492:1498 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_6EK0_305 | 1/S2/1337:1338, 1/S2/1488:1490 | Single bulged A | homologous IL_8CRE_455 IL_14190.3 | |
| IL_6EK0_238 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_6EK0_306 | 1/S2/1363:1365, 1/S2/1374:1375 | Minor groove platform | homologous IL_8CRE_457 IL_34520.4 | |
| IL_6EK0_240 | 1/S2/1395:1399, 1/S2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_15225.3 | |
| IL_6EK0_241 | 1/S2/1402:1405, 1/S2/1441:1444 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_6EK0_307 | 1/S2/1408:1409, 1/S2/1432:1438 | No text annotation | ||
| IL_6EK0_243 | 1/S2/1412:1413, 1/S2/1427:1429 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_6EK0_244 | 1/S2/1537:1539, 1/S2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_3SZX_002 IL_71625.4 | |
| IL_6EK0_308 | 1/S2/1541:1550, 1/S2/1582:1592 | No text annotation | ||
| IL_6EK0_245 | 1/S2/1550:1558, 1/S2/1577:1582 | No text annotation | ||
| IL_6EK0_246 | 1/S2/1560:1562, 1/S2/1573:1575 | Isolated non-canonical cWW pair | geometric IL_5TBW_016 NA | |
| IL_6EK0_247 | 1/S2/1604:1610, 1/S2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_6EK0_248 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation | homologous IL_4V88_463 NA | |
| IL_6EK0_249 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation | homologous IL_8CRE_467 IL_25873.3 | |
| IL_6EK0_250 | 1/S2/1706:1708, 1/S2/1826:1828 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_6EK0_251 | 1/S2/1708:1711, 1/S2/1822:1826 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.3 | |
| IL_6EK0_252 | 1/S2/1714:1716, 1/S2/1817:1819 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_6EK0_253 | 1/S2/1717:1720, 1/S2/1813:1816 | Double sheared | homologous IL_4V88_468 NA | |
| IL_6EK0_254 | 1/S2/1720:1722, 1/S2/1812:1813 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_6EK0_256 | 1/S2/1729:1731, 1/S2/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_6EK0_257 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_6EK0_258 | 1/S2/1739:1741, 1/S2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_5TBW_016 NA | |
| IL_6EK0_259 | 1/S2/1742:1746, 1/S2/1788:1792 | Triple sheared | homologous IL_4V88_474 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6EK0_009 | No text annotation | ||
| IL_6EK0_023 | Isolated non-canonical cWW pair | ||
| IL_6EK0_025 | No text annotation | ||
| IL_6EK0_026 | Isolated non-canonical cWW pair | ||
| IL_6EK0_034 | Isolated non-canonical cWW pair | ||
| IL_6EK0_036 | No text annotation | ||
| IL_6EK0_042 | Isolated non-canonical cWW pair | ||
| IL_6EK0_050 | No text annotation | ||
| IL_6EK0_054 | No text annotation | ||
| IL_6EK0_059 | No text annotation | ||
| IL_6EK0_061 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6EK0_067 | Tandem non-canonical cWW pairs | ||
| IL_6EK0_274 | No text annotation | ||
| IL_6EK0_068 | Tandem non-canonical cWW pairs | ||
| IL_6EK0_069 | No text annotation | ||
| IL_6EK0_079 | Isolated non-canonical cWW pair | ||
| IL_6EK0_086 | No text annotation | ||
| IL_6EK0_102 | No text annotation | ||
| IL_6EK0_109 | No text annotation | ||
| IL_6EK0_111 | No text annotation | ||
| IL_6EK0_113 | Not an internal loop | ||
| IL_6EK0_117 | Isolated non-canonical cWW pair | ||
| IL_6EK0_119 | Isolated non-canonical cWW pair | ||
| IL_6EK0_121 | No text annotation | ||
| IL_6EK0_124 | Decoding loop related | ||
| IL_6EK0_127 | No text annotation | ||
| IL_6EK0_135 | Isolated non-canonical cWW pair | ||
| IL_6EK0_141 | Isolated non-canonical cWW pair | ||
| IL_6EK0_143 | No text annotation | ||
| IL_6EK0_147 | Isolated non-canonical cWW pair | ||
| IL_6EK0_154 | Isolated cWH basepair | ||
| IL_6EK0_163 | No text annotation | ||
| IL_6EK0_170 | Isolated non-canonical cWW pair | ||
| IL_6EK0_180 | No text annotation | ||
| IL_6EK0_182 | No text annotation | ||
| IL_6EK0_183 | No text annotation | ||
| IL_6EK0_184 | Tandem non-canonical cWW pairs | ||
| IL_6EK0_187 | No text annotation | ||
| IL_6EK0_196 | No text annotation | ||
| IL_6EK0_198 | Isolated non-canonical cWW pair | ||
| IL_6EK0_199 | No text annotation | ||
| IL_6EK0_209 | No text annotation | ||
| IL_6EK0_213 | Tandem non-canonical cWW pairs | ||
| IL_6EK0_231 | No text annotation | ||
| IL_6EK0_237 | Isolated non-canonical cWW pair | ||
| IL_6EK0_239 | Minor groove platform with extra cWW | ||
| IL_6EK0_242 | Tandem non-canonical cWW pairs | ||
| IL_6EK0_255 | Isolated non-canonical cWW pair | ||
| IL_6EK0_260 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6EK0_001 | 1/L5/112:116, 1/L5/155:160, 1/L5/275:278 | No text annotation | ||
| J3_6EK0_031 | 1/L5/351:367, 1/L5/374:379, 1/L8/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.2 | |
| J3_6EK0_002 | 1/L5/380:387, 1/L5/414:415, 1/L8/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6EK0_032 | 1/L5/380:390, 1/L5/401:415, 1/L8/19:20 | No text annotation | homologous J3_8CRE_006 NA | |
| J3_6EK0_033 | 1/L5/451:455, 1/L5/701:705, 1/L5/1292:1296 | No text annotation | ||
| J3_6EK0_003 | 1/L5/712:713, 1/L5/955:976, 1/L5/1278:1284 | No text annotation | ||
| J3_6EK0_004 | 1/L5/1531:1537, 1/L5/1622:1624, 1/L5/1640:1643 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_6EK0_005 | 1/L5/1546:1548, 1/L5/1580:1584, 1/L5/1609:1612 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_6EK0_034 | 1/L5/1726:1727, 1/L5/1802:1806, 1/L5/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_84137.2 | |
| J3_6EK0_006 | 1/L5/2393:2399, 1/L5/2805:2807, 1/L5/2819:2822 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_6EK0_007 | 1/L5/2402:2405, 1/L5/2785:2791, 1/L5/2800:2802 | No text annotation | homologous J3_8CRE_014 NA | |
| J3_6EK0_008 | 1/L5/2440:2445, 1/L5/2515:2519, 1/L5/2536:2537 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_6EK0_035 | 1/L5/2451:2456, 1/L5/2465:2476, 1/L5/2501:2508 | No text annotation | homologous J3_8CRE_016 NA | |
| J3_6EK0_009 | 1/L5/2551:2555, 1/L5/2572:2575, 1/L5/2757:2767 | No text annotation | ||
| J3_6EK0_010 | 1/L5/2575:2576, 1/L5/2585:2589, 1/L5/2756:2757 | No text annotation | homologous J3_8P9A_087 J3_05348.2 | |
| J3_6EK0_036 | 1/L5/2598:2602, 1/L5/2737:2738, 1/L5/2742:2747 | No text annotation | homologous J3_8CRE_018 NA | |
| J3_6EK0_011 | 1/L5/3937:3939, 1/L5/4074:4078, 1/L5/4168:4173 | Kink-turn 3-way junction | geometric J3_5J7L_044 NA | |
| J3_6EK0_037 | 1/L5/4228:4230, 1/L5/4331:4342, 1/L5/4370:4375 | No text annotation | homologous J3_8CRE_021 NA | |
| J3_6EK0_013 | 1/L5/4241:4243, 1/L5/4267:4269, 1/L5/4278:4283 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_6EK0_014 | 1/L5/4463:4466, 1/L5/4491:4493, 1/L5/4507:4513 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_6EK0_038 | 1/L5/4751:4754, 1/L5/4879:4883, 1/L5/4936:4948 | No text annotation | ||
| J3_6EK0_015 | 1/L5/4970:4972, 1/L5/4986:4991, 1/L5/5060:5063 | No text annotation | ||
| J3_6EK0_039 | 1/L7/9:14, 1/L7/65:66, 1/L7/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.2 | |
| J3_6EK0_017 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation | homologous J3_8CRE_027 NA | |
| J3_6EK0_018 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation | geometric J3_8P9A_068 J3_58657.2 | |
| J3_6EK0_040 | 1/S2/40:47, 1/S2/479:487, 1/S2/512:514 | No text annotation | homologous J3_8CRE_072 J3_63856.2 | |
| J3_6EK0_019 | 1/S2/682:685, 1/S2/917:922, 1/S2/1022:1023 | No text annotation | ||
| J3_6EK0_041 | 1/S2/682:685, 1/S2/917:923, 1/S2/1019:1023 | No text annotation | ||
| J3_6EK0_020 | 1/S2/816:819, 1/S2/829:831, 1/S2/843:848 | No text annotation | homologous J3_4V88_032 NA | |
| J3_6EK0_021 | 1/S2/938:941, 1/S2/985:993, 1/S2/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
| J3_6EK0_022 | 1/S2/1094:1096, 1/S2/1136:1140, 1/S2/1147:1151 | No text annotation | ||
| J3_6EK0_023 | 1/S2/1218:1221, 1/S2/1645:1651, 1/S2/1673:1680 | No text annotation | homologous J3_8CRE_078 J3_85722.2 | |
| J3_6EK0_024 | 1/S2/1225:1228, 1/S2/1530:1532, 1/S2/1638:1641 | No text annotation | homologous J3_4V88_036 NA | |
| J3_6EK0_025 | 1/S2/1237:1244, 1/S2/1255:1266, 1/S2/1516:1520 | No text annotation | homologous J3_8CRE_080 J3_88451.2 | |
| J3_6EK0_026 | 1/S2/1272:1277, 1/S2/1320:1324, 1/S2/1504:1510 | No text annotation | homologous J3_4V88_038 NA | |
| J3_6EK0_027 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation | homologous J3_4V88_039 NA | |
| J3_6EK0_028 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation | homologous J3_8P9A_081 J3_76043.5 | |
| J3_6EK0_029 | 1/S2/1391:1395, 1/S2/1450:1456, 1/S2/1470:1479 | No text annotation | ||
| J3_6EK0_030 | 1/S2/1532:1536, 1/S2/1597:1604, 1/S2/1635:1638 | No text annotation | homologous J3_8C3A_044 NA | |
| J3_6EK0_042 | 1/S6/8:31, 1/S6/39:49, 1/S6/65:66 | No text annotation | ||
| J4_6EK0_001 | 1/L5/111:112, 1/L5/278:283, 1/L5/304:310, 1/L5/327:330 | No text annotation | homologous J4_8P9A_012 J4_94698.2 | |
| J4_6EK0_002 | 1/L5/196:199, 1/L5/215:222, 1/L5/226:228, 1/L5/240:244 | No text annotation | ||
| J4_6EK0_003 | 1/L5/981:983, 1/L5/1070:1072, 1/L5/1240:1244, 1/L5/1267:1273 | No text annotation | ||
| J4_6EK0_004 | 1/L5/2365:2371, 1/L5/2389:2391, 1/L5/2824:2829, 1/L5/3856:3857 | No text annotation | ||
| J4_6EK0_005 | 1/L5/2406:2410, 1/L5/2434:2439, 1/L5/2538:2539, 1/L5/2777:2784 | No text annotation | homologous J4_8CRE_004 NA | |
| J4_6EK0_006 | 1/L5/2618:2619, 1/L5/2637:2642, 1/L5/2692:2698, 1/L5/2718:2719 | No text annotation | ||
| J4_6EK0_007 | 1/L5/3634:3638, 1/L5/3650:3654, 1/L5/3690:3694, 1/L5/3821:3826 | No text annotation | homologous J4_8CRE_006 NA | |
| J4_6EK0_008 | 1/L5/3696:3698, 1/L5/3752:3753, 1/L5/3771:3780, 1/L5/3814:3819 | No text annotation | homologous J4_8CRE_007 NA | |
| J4_6EK0_009 | 1/L5/4231:4235, 1/L5/4289:4291, 1/L5/4318:4319, 1/L5/4328:4330 | No text annotation | ||
| J4_6EK0_010 | 1/L5/4231:4235, 1/L5/4289:4293, 1/L5/4317:4319, 1/L5/4328:4330 | No text annotation | homologous J4_8P9A_019 J4_59590.2 | |
| J4_6EK0_011 | 1/L5/4587:4590, 1/L5/4620:4621, 1/L5/4676:4678, 1/L5/4712:4715 | No text annotation | ||
| J4_6EK0_012 | 1/S2/98:106, 1/S2/355:357, 1/S2/405:409, 1/S2/431:432 | No text annotation | homologous J4_8P9A_021 J4_15241.3 | |
| J4_6EK0_013 | 1/S2/671:673, 1/S2/1032:1037, 1/S2/1078:1089, 1/S2/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_14595.2 | |
| J5_6EK0_001 | 1/L5/19:21, 1/L8/35:42, 1/L8/101:106, 1/L8/113:114, 1/L8/136:138 | No text annotation | homologous J5_8CRE_001 NA | |
| J5_6EK0_002 | 1/L5/1335:1340, 1/L5/1516:1519, 1/L5/1658:1661, 1/L5/2288:2290, 1/L5/2345:2351 | No text annotation | homologous J5_8P9A_011 J5_08384.2 | |
| J5_6EK0_003 | 1/L5/2855:2863, 1/L5/2887:2888, 1/L5/3613:3614, 1/L5/3618:3626, 1/L5/3835:3837 | No text annotation | homologous J5_8CRE_004 NA | |
| J5_6EK0_004 | 1/L5/3902:3910, 1/L5/4392:4400, 1/L5/4444:4453, 1/L5/4528:4534, 1/L5/4552:4558 | No text annotation | ||
| J5_6EK0_005 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4228, 1/L5/4375:4381 | No text annotation | homologous J5_8P9A_015 J5_96125.2 | |
| J5_6EK0_006 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:565, 1/S2/585:595, 1/S2/641:644 | No text annotation | ||
| J5_6EK0_007 | 1/S2/53:56, 1/S2/89:96, 1/S2/434:436, 1/S2/457:459, 1/S2/470:474 | No text annotation | homologous J5_8CRE_020 J5_58574.2 | |
| J5_6EK0_008 | 1/S2/124:129, 1/S2/183:185, 1/S2/214:215, 1/S2/310:312, 1/S2/337:339 | No text annotation | ||
| J6_6EK0_001 | 1/L5/21:26, 1/L5/57:67, 1/L5/74:78, 1/L5/105:109, 1/L5/332:339, 1/L8/33:35 | No text annotation | ||
| J6_6EK0_002 | 1/L5/1352:1355, 1/L5/1384:1388, 1/L5/1395:1399, 1/L5/1418:1421, 1/L5/1464:1466, 1/L5/1499:1504 | No text annotation | ||
| J6_6EK0_003 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4230, 1/L5/4331:4342, 1/L5/4370:4381 | No text annotation | ||
| J7_6EK0_001 | 1/L5/1666:1671, 1/L5/1684:1685, 1/L5/1852:1855, 1/L5/1879:1884, 1/L5/1895:1899, 1/L5/2077:2078, 1/L5/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6EK0_012 | No text annotation | ||
| J3_6EK0_016 | No text annotation |
Coloring options: