HL_6EK0_012

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUUCCCGCGCGGGGG

Length

16 nucleotides

Bulged bases

6EK0|1|L5|U|513, 6EK0|1|L5|U|514, 6EK0|1|L5|C|515, 6EK0|1|L5|C|517

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EK0|1|L5|C|511
6EK0|1|L5|U|512
6EK0|1|L5|U|513
6EK0|1|L5|U|514
6EK0|1|L5|C|515
6EK0|1|L5|C|516
6EK0|1|L5|C|517
6EK0|1|L5|G|518
6EK0|1|L5|C|519
6EK0|1|L5|G|642
6EK0|1|L5|C|643
6EK0|1|L5|G|644
6EK0|1|L5|G|645
6EK0|1|L5|G|646
6EK0|1|L5|G|647
6EK0|1|L5|G|648

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L27a