HL_6EK0_015

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGCGGACUGUCCCCAGUGCGCC

Length

22 nucleotides

Bulged bases

6EK0|1|L5|G|1178, 6EK0|1|L5|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EK0|1|L5|G|1170
6EK0|1|L5|G|1171
6EK0|1|L5|C|1172
6EK0|1|L5|G|1173
6EK0|1|L5|G|1174
6EK0|1|L5|A|1175
6EK0|1|L5|C|1176
6EK0|1|L5|U|1177
6EK0|1|L5|G|1178
6EK0|1|L5|U|1179
6EK0|1|L5|C|1180
6EK0|1|L5|C|1181
6EK0|1|L5|C|1182
6EK0|1|L5|C|1183
6EK0|1|L5|A|1184
6EK0|1|L5|G|1185
6EK0|1|L5|U|1186
6EK0|1|L5|G|1187
6EK0|1|L5|C|1188
6EK0|1|L5|G|1189
6EK0|1|L5|C|1190
6EK0|1|L5|C|1191

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like