HL_6EK0_017

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

C(OMG)UCUUG(1MA)AAC(A2M)CG

Length

14 nucleotides

Bulged bases

6EK0|1|L5|C|1325

QA status

Modified nucleotides: OMG, 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EK0_017 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1652

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6EK0|1|L5|C|1315
6EK0|1|L5|OMG|1316
6EK0|1|L5|U|1317
6EK0|1|L5|C|1318
6EK0|1|L5|U|1319
6EK0|1|L5|U|1320
6EK0|1|L5|G|1321
6EK0|1|L5|1MA|1322
6EK0|1|L5|A|1323
6EK0|1|L5|A|1324
6EK0|1|L5|C|1325
6EK0|1|L5|A2M|1326
6EK0|1|L5|C|1327
6EK0|1|L5|G|1328

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain La

60S ribosomal protein L27a

Chain Le

60S ribosomal protein L32