HL_6EK0_027

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCUUGGGGCCGAAACGAUCUCAAC

Length

25 nucleotides

Bulged bases

6EK0|1|L5|U|1757, 6EK0|1|L5|A|1765, 6EK0|1|L5|A|1766, 6EK0|1|L5|A|1767, 6EK0|1|L5|G|1769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EK0|1|L5|G|1753
6EK0|1|L5|U|1754
6EK0|1|L5|C|1755
6EK0|1|L5|U|1756
6EK0|1|L5|U|1757
6EK0|1|L5|G|1758
6EK0|1|L5|G|1759
6EK0|1|L5|G|1760
6EK0|1|L5|G|1761
6EK0|1|L5|C|1762
6EK0|1|L5|C|1763
6EK0|1|L5|G|1764
6EK0|1|L5|A|1765
6EK0|1|L5|A|1766
6EK0|1|L5|A|1767
6EK0|1|L5|C|1768
6EK0|1|L5|G|1769
6EK0|1|L5|A|1770
6EK0|1|L5|U|1771
6EK0|1|L5|C|1772
6EK0|1|L5|U|1773
6EK0|1|L5|C|1774
6EK0|1|L5|A|1775
6EK0|1|L5|A|1776
6EK0|1|L5|C|1777

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18