HL_6EK0_031

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCAC

Length

50 nucleotides

Bulged bases

6EK0|1|L5|G|1975, 6EK0|1|L5|U|1980, 6EK0|1|L5|G|1981, 6EK0|1|L5|A|1984, 6EK0|1|L5|G|1988, 6EK0|1|L5|U|1997, 6EK0|1|L5|A|2009, 6EK0|1|L5|C|2011

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EK0|1|L5|G|1969
6EK0|1|L5|A|1970
6EK0|1|L5|C|1971
6EK0|1|L5|G|1972
6EK0|1|L5|G|1973
6EK0|1|L5|U|1974
6EK0|1|L5|G|1975
6EK0|1|L5|G|1976
6EK0|1|L5|C|1977
6EK0|1|L5|C|1978
6EK0|1|L5|A|1979
6EK0|1|L5|U|1980
6EK0|1|L5|G|1981
6EK0|1|L5|G|1982
6EK0|1|L5|A|1983
6EK0|1|L5|A|1984
6EK0|1|L5|G|1985
6EK0|1|L5|U|1986
6EK0|1|L5|C|1987
6EK0|1|L5|G|1988
6EK0|1|L5|G|1989
6EK0|1|L5|A|1990
6EK0|1|L5|A|1991
6EK0|1|L5|U|1992
6EK0|1|L5|C|1993
6EK0|1|L5|C|1994
6EK0|1|L5|G|1995
6EK0|1|L5|C|1996
6EK0|1|L5|U|1997
6EK0|1|L5|A|1998
6EK0|1|L5|A|1999
6EK0|1|L5|G|2000
6EK0|1|L5|G|2001
6EK0|1|L5|A|2002
6EK0|1|L5|G|2003
6EK0|1|L5|U|2004
6EK0|1|L5|G|2005
6EK0|1|L5|U|2006
6EK0|1|L5|G|2007
6EK0|1|L5|U|2008
6EK0|1|L5|A|2009
6EK0|1|L5|A|2010
6EK0|1|L5|C|2011
6EK0|1|L5|A|2012
6EK0|1|L5|A|2013
6EK0|1|L5|C|2014
6EK0|1|L5|U|2015
6EK0|1|L5|C|2016
6EK0|1|L5|A|2017
6EK0|1|L5|C|2018

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain Lm

Ubiquitin-60S ribosomal protein L40