HL_6EK0_055

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAACG(P7G)GC

Length

10 nucleotides

Bulged bases

6EK0|1|L5|A|3876, 6EK0|1|L5|A|3877, 6EK0|1|L5|C|3878

QA status

Modified nucleotides: P7G

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EK0_055 not in the Motif Atlas

Homologous match to HL_8CRE_049

Geometric discrepancy: 0.1035

The information below is about HL_8CRE_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6EK0|1|L5|G|3873
6EK0|1|L5|G|3874
6EK0|1|L5|G|3875
6EK0|1|L5|A|3876
6EK0|1|L5|A|3877
6EK0|1|L5|C|3878
6EK0|1|L5|G|3879
6EK0|1|L5|P7G|3880
6EK0|1|L5|G|3881
6EK0|1|L5|C|3882

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain Le

60S ribosomal protein L32