Loop HL_6EK0

3D structure

PDB id: 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
Description: High-resolution cryo-EM structure of the human 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

Loop

Sequence: AGACAUGAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUUUGGCGGGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUU*U
Length: 124 nucleotides
Bulged bases: 6EK0|1|L5|A|3962, 6EK0|1|L5|A|3963, 6EK0|1|L5|G|3970, 6EK0|1|L5|G|4034, 6EK0|1|L5|C|4038, 6EK0|1|L5|U|4044, 6EK0|1|L5|A|4053, 6EK0|1|L5|C|4054, 6EK0|1|L5|U|4058, 6EK0|1|L5|G|4013, 6EK0|1|L5|G|4014, 6EK0|1|L5|C|4015, 6EK0|1|L5|G|4016, 6EK0|1|L5|G|4017, 6EK0|1|L5|G|4018, 6EK0|1|L5|G|4019, 6EK0|1|L5|U|4020, 6EK0|1|L5|C|4021, 6EK0|1|L5|C|4022, 6EK0|1|L5|G|4023, 6EK0|1|L5|C|4024, 6EK0|1|L5|C|4025, 6EK0|1|L5|G|4026, 6EK0|1|L5|G|4027, 6EK0|1|L5|C|4028, 6EK0|1|L5|C|4029, 6EK0|1|L5|C|4030, 6EK0|1|L5|U|4031, 6EK0|1|L5|G|4032, 6EK0|1|L5|C|4033, 6EK0|1|L5|G|4034, 6EK0|1|L5|G|4035, 6EK0|1|L5|C|4038, 6EK0|1|L5|U|4044, 6EK0|1|L5|G|4045, 6EK0|1|L5|A|4047, 6EK0|1|L5|U|4049, 6EK0|1|L5|A|4053, 6EK0|1|L5|C|4054, 6EK0|1|L5|U|4058
QA status: Missing nucleotides

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6EK0|1|L5|A|3945
6EK0|1|L5|G|3946
6EK0|1|L5|A|3947
6EK0|1|L5|C|3948
6EK0|1|L5|A|3949
6EK0|1|L5|U|3950
6EK0|1|L5|G|3951
6EK0|1|L5|A|3952
6EK0|1|L5|G|3953
6EK0|1|L5|A|3954
6EK0|1|L5|G|3955
6EK0|1|L5|G|3956
6EK0|1|L5|U|3957
6EK0|1|L5|G|3958
6EK0|1|L5|U|3959
6EK0|1|L5|A|3960
6EK0|1|L5|G|3961
6EK0|1|L5|A|3962
6EK0|1|L5|A|3963
6EK0|1|L5|U|3964
6EK0|1|L5|A|3965
6EK0|1|L5|A|3966
6EK0|1|L5|G|3967
6EK0|1|L5|U|3968
6EK0|1|L5|G|3969
6EK0|1|L5|G|3970
6EK0|1|L5|G|3971
6EK0|1|L5|A|3972
6EK0|1|L5|G|3973
6EK0|1|L5|G|3974
6EK0|1|L5|C|3975
6EK0|1|L5|C|3976
6EK0|1|L5|C|3977
6EK0|1|L5|G|4034
6EK0|1|L5|G|4035
6EK0|1|L5|G|4036
6EK0|1|L5|C|4037
6EK0|1|L5|C|4038
6EK0|1|L5|G|4039
6EK0|1|L5|C|4040
6EK0|1|L5|C|4041
6EK0|1|L5|G|4042
6EK0|1|L5|G|4043
6EK0|1|L5|U|4044
6EK0|1|L5|G|4045
6EK0|1|L5|A|4046
6EK0|1|L5|A|4047
6EK0|1|L5|A|4048
6EK0|1|L5|U|4049
6EK0|1|L5|A|4050
6EK0|1|L5|C|4051
6EK0|1|L5|C|4052
6EK0|1|L5|A|4053
6EK0|1|L5|C|4054
6EK0|1|L5|U|4055
6EK0|1|L5|A|4056
6EK0|1|L5|C|4057
6EK0|1|L5|U|4058
6EK0|1|L5|C|4059
6EK0|1|L5|U|4060
6EK0|1|L5|G|4061
6EK0|1|L5|A|4062
6EK0|1|L5|U|4063
6EK0|1|L5|C|4064
6EK0|1|L5|G|4065
6EK0|1|L5|U|4066
6EK0|1|L5|U|4067
6EK0|1|L5|U|4068
6EK0|1|L5|G|4013
6EK0|1|L5|G|4014
6EK0|1|L5|C|4015
6EK0|1|L5|G|4016
6EK0|1|L5|G|4017
6EK0|1|L5|G|4018
6EK0|1|L5|G|4019
6EK0|1|L5|U|4020
6EK0|1|L5|C|4021
6EK0|1|L5|C|4022
6EK0|1|L5|G|4023
6EK0|1|L5|C|4024
6EK0|1|L5|C|4025
6EK0|1|L5|G|4026
6EK0|1|L5|G|4027
6EK0|1|L5|C|4028
6EK0|1|L5|C|4029
6EK0|1|L5|C|4030
6EK0|1|L5|U|4031
6EK0|1|L5|G|4032
6EK0|1|L5|C|4033
6EK0|1|L5|G|4034
6EK0|1|L5|G|4035
6EK0|1|L5|G|4036
6EK0|1|L5|C|4037
6EK0|1|L5|C|4038
6EK0|1|L5|G|4039
6EK0|1|L5|C|4040
6EK0|1|L5|C|4041
6EK0|1|L5|G|4042
6EK0|1|L5|G|4043
6EK0|1|L5|U|4044
6EK0|1|L5|G|4045
6EK0|1|L5|A|4046
6EK0|1|L5|A|4047
6EK0|1|L5|A|4048
6EK0|1|L5|U|4049
6EK0|1|L5|A|4050
6EK0|1|L5|C|4051
6EK0|1|L5|C|4052
6EK0|1|L5|A|4053
6EK0|1|L5|C|4054
6EK0|1|L5|U|4055
6EK0|1|L5|A|4056
6EK0|1|L5|C|4057
6EK0|1|L5|U|4058
6EK0|1|L5|C|4059
6EK0|1|L5|U|4060
6EK0|1|L5|G|4061
6EK0|1|L5|A|4062
6EK0|1|L5|U|4063
6EK0|1|L5|C|4064
6EK0|1|L5|G|4065
6EK0|1|L5|U|4066
6EK0|1|L5|U|4067
*
6EK0|1|L5|U|4068

Current chains

Chain L5: 28S ribosomal RNA

Nearby chains

Chain Li: 60S ribosomal protein L36
Chain Lz: 60S ribosomal protein L10a
Chain S6: Transfer RNA; tRNA
Chain SB: 40S ribosomal protein S3a

HL_6EK0_056