HL_6EK0_058

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

C(I4U)G(OMG)GGCGG

Length

9 nucleotides

Bulged bases

6EK0|1|L5|G|4195

QA status

Modified nucleotides: I4U, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EK0_058 not in the Motif Atlas

Homologous match to HL_8CRE_053

Geometric discrepancy: 0.104

The information below is about HL_8CRE_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6EK0|1|L5|C|4193
6EK0|1|L5|I4U|4194
6EK0|1|L5|G|4195
6EK0|1|L5|OMG|4196
6EK0|1|L5|G|4197
6EK0|1|L5|G|4198
6EK0|1|L5|C|4199
6EK0|1|L5|G|4200
6EK0|1|L5|G|4201

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain Lb

60S ribosomal protein L29