HL_6EK0_071

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CU(B8K)AACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6EK0|1|L5|G|4694, 6EK0|1|L5|C|4698

QA status

Modified nucleotides: B8K

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EK0_071 not in the Motif Atlas

Homologous match to HL_8CRE_066

Geometric discrepancy: 0.0992

The information below is about HL_8CRE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6EK0|1|L5|C|4688
6EK0|1|L5|U|4689
6EK0|1|L5|B8K|4690
6EK0|1|L5|A|4691
6EK0|1|L5|A|4692
6EK0|1|L5|C|4693
6EK0|1|L5|G|4694
6EK0|1|L5|C|4695
6EK0|1|L5|C|4696
6EK0|1|L5|U|4697
6EK0|1|L5|C|4698
6EK0|1|L5|U|4699
6EK0|1|L5|A|4700
6EK0|1|L5|A|4701
6EK0|1|L5|G|4702

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40