HL_6EK0_087

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

6EK0|1|S2|C|324, 6EK0|1|S2|C|325, 6EK0|1|S2|C|326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EK0_087 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.3523

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6EK0|1|S2|C|322
6EK0|1|S2|C|323
6EK0|1|S2|C|324
6EK0|1|S2|C|325
6EK0|1|S2|C|326
6EK0|1|S2|G|327
6EK0|1|S2|U|328
6EK0|1|S2|G|329

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LW

60S ribosomal protein L24