HL_6EK0_093

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUUUCGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EK0_093 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.381

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6EK0|1|S2|U|538
6EK0|1|S2|C|539
6EK0|1|S2|U|540
6EK0|1|S2|U|541
6EK0|1|S2|U|542
6EK0|1|S2|C|543
6EK0|1|S2|G|544
6EK0|1|S2|A|545

Current chains

Chain S2

18S ribosomal RNA

Nearby chains