HL_6EK0_110

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

6EK0|1|S2|C|1419, 6EK0|1|S2|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EK0_110 not in the Motif Atlas

Homologous match to HL_8CRE_220

Geometric discrepancy: 0.4885

The information below is about HL_8CRE_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

6EK0|1|S2|C|1416
6EK0|1|S2|C|1417
6EK0|1|S2|C|1418
6EK0|1|S2|C|1419
6EK0|1|S2|G|1420
6EK0|1|S2|A|1421
6EK0|1|S2|G|1422
6EK0|1|S2|C|1423
6EK0|1|S2|G|1424

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain ST

40S ribosomal protein S19