HL_6EK0_117
3D structure
- PDB id
- 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 6EK0|1|S6|C|34, 6EK0|1|S6|A|35, 6EK0|1|S6|U|36, 6EK0|1|S6|A|37, 6EK0|1|S6|A|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6EK0_117 not in the Motif Atlas
- Geometric match to HL_2ZNI_001
- Geometric discrepancy: 0.3865
- The information below is about HL_2ZNI_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.9
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
6EK0|1|S6|G|31
6EK0|1|S6|C|32
6EK0|1|S6|C|33
6EK0|1|S6|C|34
6EK0|1|S6|A|35
6EK0|1|S6|U|36
6EK0|1|S6|A|37
6EK0|1|S6|A|38
6EK0|1|S6|C|39
Current chains
- Chain S6
- Human initiator Met-tRNA-i
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SF
- 40S ribosomal protein S5
- Chain SO
- 40S ribosomal protein S14
- Chain Sc
- 40S ribosomal protein S28
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