HL_6ELZ_012

3D structure

PDB id

6ELZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

6ELZ|1|1|U|545, 6ELZ|1|1|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ELZ_012 not in the Motif Atlas

Homologous match to HL_8P9A_124

Geometric discrepancy: 0.5225

The information below is about HL_8P9A_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ELZ|1|1|G|542
6ELZ|1|1|C|543
6ELZ|1|1|C|544
6ELZ|1|1|U|545
6ELZ|1|1|C|546
6ELZ|1|1|G|547
6ELZ|1|1|G|548
6ELZ|1|1|U|549

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain S

60S ribosomal protein L20-A