Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6ELZ_0011/1/38:45No text annotation
homologous
HL_8C3A_001
NA
HL_6ELZ_0021/1/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_6ELZ_0031/1/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_6ELZ_0041/1/132:136No text annotation
homologous
HL_8C3A_004
NA
HL_6ELZ_0051/1/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_6ELZ_0061/1/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_6ELZ_0071/1/216:224T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_6ELZ_0081/1/278:287No text annotation
homologous
HL_5TBW_008
NA
HL_6ELZ_0101/1/357:362GNRA
homologous
HL_5TBW_010
NA
HL_6ELZ_0111/1/382:387GNRA
homologous
HL_8C3A_011
NA
HL_6ELZ_0131/1/599:604GNRA
homologous
HL_5TBW_013
NA
HL_6ELZ_0141/1/640:649No text annotation
geometric
HL_8C3A_015
NA
HL_6ELZ_0151/1/686:694No text annotation
homologous
HL_8C3A_015
NA
HL_6ELZ_0161/1/707:712GNRA
homologous
HL_8C3A_016
NA
HL_6ELZ_0201/1/876:885No text annotation
HL_6ELZ_0211/1/911:916GNRA
geometric
HL_5Y7M_002
HL_34789.1
HL_6ELZ_0241/1/1126:1132Other HL
geometric
HL_4V9F_039
HL_67772.1
HL_6ELZ_0251/1/1148:1155No text annotation
homologous
HL_5TBW_026
NA
HL_6ELZ_0261/1/1239:1249No text annotation
homologous
HL_8C3A_027
NA
HL_6ELZ_0271/1/1267:1274GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_6ELZ_0281/1/1347:1357No text annotation
homologous
HL_5TBW_029
NA
HL_6ELZ_0291/1/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_6ELZ_0301/1/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_6ELZ_0311/1/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_6ELZ_0321/1/1544:1549GNRA variation
homologous
HL_8C3A_033
NA
HL_6ELZ_0331/1/1565:1574No text annotation
HL_6ELZ_0341/1/1599:1608No text annotation
homologous
HL_5TBW_035
NA
HL_6ELZ_0351/1/1634:1639GNRA
homologous
HL_8C3A_036
NA
HL_6ELZ_0361/1/1680:1688No text annotation
homologous
HL_8C3A_037
NA
HL_6ELZ_0371/1/1719:1725No text annotation
homologous
HL_5TBW_038
NA
HL_6ELZ_0381/1/1759:1766No text annotation
geometric
HL_5NFV_001
HL_69752.3
HL_6ELZ_0621/1/1862:1868GNRA
homologous
HL_8P9A_153
HL_34789.1
HL_6ELZ_0431/1/2369:2378No text annotation
geometric
HL_4WF9_003
HL_75660.6
HL_6ELZ_0461/1/2897:2904No text annotation
homologous
HL_5TBW_062
NA
HL_6ELZ_0471/1/2918:2928No text annotation
HL_6ELZ_0481/1/2963:2968No text annotation
geometric
HL_1WZ2_007
HL_75660.6
HL_6ELZ_0491/1/3025:3030GNRA related
geometric
HL_3OXE_002
HL_37569.1
HL_6ELZ_0511/1/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_6ELZ_0521/1/3194:3197No text annotation
homologous
HL_5TBW_068
NA
HL_6ELZ_0531/1/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_6ELZ_0541/1/3303:3311No text annotation
homologous
HL_8C3A_071
NA
HL_6ELZ_0631/2/47:56No text annotation
homologous
HL_8P9A_186
HL_17803.1
HL_6ELZ_0561/2/69:89No text annotation
homologous
HL_8P9A_187
HL_68571.1
HL_6ELZ_0571/2/108:114No text annotation
homologous
HL_5TBW_075
NA
HL_6ELZ_0581/2/124:129No text annotation
homologous
HL_5TBW_076
NA
HL_6ELZ_0641/6/36:43No text annotation

Problematic loops

#loop idProblemSequence
HL_6ELZ_009No text annotation
HL_6ELZ_012No text annotation
HL_6ELZ_017GNRA
HL_6ELZ_018No text annotation
HL_6ELZ_019GNRA
HL_6ELZ_022No text annotation
HL_6ELZ_023No text annotation
HL_6ELZ_061No text annotation
HL_6ELZ_039No text annotation
HL_6ELZ_040tRNA anticodon loop
HL_6ELZ_041No text annotation
HL_6ELZ_042No text annotation
HL_6ELZ_044No text annotation
HL_6ELZ_045Externally structured
HL_6ELZ_050Ribsomal LSU H95
HL_6ELZ_055No text annotation
HL_6ELZ_059No text annotation
HL_6ELZ_065No text annotation
HL_6ELZ_060No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6ELZ_0011/1/7:8,
1/2/150:152
Single bulged C
homologous
IL_8C3A_002
NA
IL_6ELZ_0021/1/13:15,
1/2/144:145
Single bulged U
homologous
IL_8C3A_003
NA
IL_6ELZ_0031/1/27:28,
1/1/56:58
No text annotation
homologous
IL_8C3A_004
NA
IL_6ELZ_0041/1/31:38,
1/1/45:53
tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA
IL_6ELZ_0051/1/82:89,
1/1/97:103
No text annotation
homologous
IL_8C3A_006
NA
IL_6ELZ_0061/1/123:124,
1/1/144:149
No text annotation
geometric
IL_5TBW_007
NA
IL_6ELZ_0071/1/125:127,
1/1/141:143
Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_6ELZ_0081/1/164:166,
1/1/256:257
Single bulged A
geometric
IL_6D3P_004
NA
IL_6ELZ_0091/1/169:170,
1/1/248:253
No text annotation
IL_6ELZ_0101/1/177:178,
1/1/238:241
No text annotation
geometric
IL_5TBW_501
NA
IL_6ELZ_0111/1/189:191,
1/1/204:205
Single bulged U
homologous
IL_8C3A_013
NA
IL_6ELZ_0121/1/337:339,
1/2/25:26
Single bulged A
homologous
IL_5TBW_013
NA
IL_6ELZ_0131/1/376:379,
1/1/390:403
No text annotation
homologous
IL_8C3A_015
NA
IL_6ELZ_0141/1/404:410,
1/2/13:19
Triple sheared with non-canonical cWW
geometric
IL_5TBW_015
NA
IL_6ELZ_0151/1/429:431,
1/1/628:630
Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_6ELZ_0171/1/512:513,
1/1/577:579
Single bulged A
homologous
IL_5TBW_018
NA
IL_6ELZ_0181/1/517:525,
1/1/567:573
No text annotation
homologous
IL_5TBW_019
NA
IL_6ELZ_0191/1/531:538,
1/1/553:561
No text annotation
IL_6ELZ_0201/1/668:670,
1/1/792:794
Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_6ELZ_0211/1/680:684,
1/1/696:700
No text annotation
homologous
IL_5TBW_022
NA
IL_6ELZ_0221/1/725:728,
1/1/741:745
No text annotation
homologous
IL_8C3A_025
NA
IL_6ELZ_0231/1/752:753,
1/1/779:781
Single bulged A
homologous
IL_5TBW_024
NA
IL_6ELZ_0251/1/803:805,
1/1/938:940
Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_6ELZ_0261/1/805:809,
1/1/931:938
No text annotation
IL_6ELZ_0271/1/833:838,
1/1/855:861
Quadruple sheared
geometric
IL_3FTF_001
IL_71841.1
IL_6ELZ_0281/1/870:872,
1/1/888:890
Isolated non-canonical cWW pair
geometric
IL_3GM7_004
IL_01003.1
IL_6ELZ_0301/1/969:970,
1/1/1111:1113
No text annotation
homologous
IL_8C3A_038
NA
IL_6ELZ_1121/1/975:981,
1/1/1102:1106
No text annotation
IL_6ELZ_0321/1/983:985,
1/1/1099:1100
Single bulged G
homologous
IL_8C3A_040
NA
IL_6ELZ_0341/1/1120:1122,
1/1/1136:1138
Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_6ELZ_0351/1/1167:1171,
1/1/1328:1332
UAA/GAN
homologous
IL_8C3A_051
NA
IL_6ELZ_0361/1/1173:1180,
1/1/1325:1326
SSU/LSU pseudoknot
geometric
IL_5TBW_049
NA
IL_6ELZ_0371/1/1180:1182,
1/1/1324:1325
Single bulged U
homologous
IL_5TBW_050
NA
IL_6ELZ_0381/1/1186:1194,
1/1/1314:1320
No text annotation
IL_6ELZ_0391/1/1194:1206,
1/1/1298:1314
No text annotation
IL_6ELZ_0401/1/1207:1209,
1/1/1296:1297
Single bulged U
homologous
IL_5TBW_053
NA
IL_6ELZ_0411/1/1218:1226,
1/1/1283:1287
Kink-turn
homologous
IL_5TBW_054
NA
IL_6ELZ_0421/1/1234:1238,
1/1/1250:1254
No text annotation
homologous
IL_8C3A_058
NA
IL_6ELZ_0431/1/1262:1266,
1/1/1275:1277
Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_6ELZ_0441/1/1376:1378,
1/1/1428:1431
No text annotation
homologous
IL_8C3A_061
NA
IL_6ELZ_0451/1/1385:1387,
1/1/1420:1421
Single bulged A
homologous
IL_8C3A_062
NA
IL_6ELZ_0461/1/1388:1395,
1/1/1415:1419
Kink-turn
homologous
IL_8C3A_063
NA
IL_6ELZ_0471/1/1398:1400,
1/1/1411:1412
Single bulged A
homologous
IL_5TBW_060
NA
IL_6ELZ_0481/1/1444:1450,
1/1/2354:2359
No text annotation
homologous
IL_8C3A_065
NA
IL_6ELZ_0501/1/1501:1505,
1/1/1513:1515
C-loop
geometric
IL_4JRC_003
IL_63596.12
IL_6ELZ_0511/1/1532:1536,
1/1/1585:1590
UAA/GAN
homologous
IL_8C3A_067
NA
IL_6ELZ_1131/1/1618:1620,
1/1/1825:1826
Single stack bend
geometric
IL_5J7L_032
NA
IL_6ELZ_1141/1/1623:1624,
1/1/1820:1822
No text annotation
homologous
IL_8CRE_070
NA
IL_6ELZ_0541/1/1625:1631,
1/1/1811:1819
No text annotation
IL_6ELZ_0551/1/1645:1649,
1/1/1806:1810
Triple sheared
homologous
IL_8C3A_073
NA
IL_6ELZ_1071/1/1654:1658,
1/1/1791:1801
No text annotation
IL_6ELZ_0561/1/1661:1663,
1/1/1786:1788
Isolated non-canonical cWW pair
homologous
IL_8C3A_074
NA
IL_6ELZ_0571/1/1669:1670,
1/1/1778:1780
Single bulged C
homologous
IL_8C3A_075
NA
IL_6ELZ_0581/1/1670:1671,
1/1/1776:1778
Single stack bend
geometric
IL_4C7O_002
NA
IL_6ELZ_0591/1/1694:1698,
1/1/1747:1752
No text annotation
homologous
IL_5TBW_071
NA
IL_6ELZ_0601/1/1702:1707,
1/1/1737:1743
No text annotation
homologous
IL_5TBW_072
NA
IL_6ELZ_0611/1/1711:1717,
1/1/1727:1733
Kink-turn
homologous
IL_5TBW_073
NA
IL_6ELZ_0621/1/1883:1889,
1/1/2346:2349
No text annotation
homologous
IL_8C3A_080
NA
IL_6ELZ_0631/1/1895:1897,
1/1/2338:2340
No text annotation
homologous
IL_8C3A_081
NA
IL_6ELZ_0641/1/1898:1901,
1/1/2336:2337
Major groove platform; stack outside cWW
homologous
IL_8C3A_082
NA
IL_6ELZ_1081/1/1898:1906,
1/1/2333:2337
No text annotation
homologous
IL_8C3A_484
NA
IL_6ELZ_0651/1/1901:1906,
1/1/2333:2336
Intercalated tWH
geometric
IL_4V9F_062
IL_28217.1
IL_6ELZ_0661/1/2391:2395,
1/1/2985:2988
No text annotation
IL_6ELZ_1151/1/2404:2405,
1/1/2816:2818
Single stack bend
geometric
IL_8P9A_238
IL_15011.1
IL_6ELZ_0711/1/2835:2839,
1/1/2849:2853
No text annotation
homologous
IL_8C3A_114
NA
IL_6ELZ_1171/1/2879:2882,
1/1/2940:2947
No text annotation
IL_6ELZ_0741/1/2889:2891,
1/1/2912:2914
Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_6ELZ_1091/1/2889:2892,
1/1/2909:2914
No text annotation
homologous
IL_8P9A_338
IL_07469.3
IL_6ELZ_0751/1/2891:2892,
1/1/2909:2912
Major groove platform with intercalation
homologous
IL_8C3A_119
NA
IL_6ELZ_0761/1/2959:2961,
1/1/2970:2973
No text annotation
homologous
IL_8C3A_121
NA
IL_6ELZ_0771/1/3004:3007,
1/1/3139:3144
Double sheared
homologous
IL_5TBW_114
NA
IL_6ELZ_0781/1/3012:3014,
1/1/3040:3042
Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_6ELZ_0791/1/3018:3025,
1/1/3030:3036
8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_6ELZ_0801/1/3047:3051,
1/1/3091:3094
Major groove minor groove platform with tHH
homologous
IL_8C3A_126
NA
IL_6ELZ_0811/1/3054:3059,
1/1/3084:3088
UAA/GAN related
homologous
IL_8C3A_127
NA
IL_6ELZ_0821/1/3063:3064,
1/1/3077:3080
No text annotation
homologous
IL_8C3A_128
NA
IL_6ELZ_0831/1/3103:3107,
1/1/3127:3131
UAA/GAN
homologous
IL_8C3A_129
NA
IL_6ELZ_0841/1/3164:3166,
1/1/3284:3286
Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_6ELZ_0851/1/3168:3170,
1/1/3280:3282
Isolated non-canonical cWW pair
homologous
IL_5TBW_122
NA
IL_6ELZ_0861/1/3177:3179,
1/1/3210:3211
Single bulged A
homologous
IL_5TBW_123
NA
IL_6ELZ_0871/1/3179:3188,
1/1/3204:3210
No text annotation
geometric
IL_5TBW_124
NA
IL_6ELZ_0881/1/3193:3194,
1/1/3197:3199
Single bulged U
geometric
IL_5TBW_125
NA
IL_6ELZ_0891/1/3225:3229,
1/1/3258:3260
No text annotation
homologous
IL_8C3A_133
NA
IL_6ELZ_0911/1/3235:3238,
1/1/3249:3252
Tandem non-canonical cWW pairs
homologous
IL_5TBW_128
NA
IL_6ELZ_0921/1/3300:3303,
1/1/3311:3314
Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_6ELZ_0931/1/3318:3320,
1/1/3387:3388
Single bulged U
geometric
IL_5TBW_130
NA
IL_6ELZ_1101/1/3324:3325,
1/1/3381:3383
Single bulged U
homologous
IL_8P9A_358
IL_97561.1
IL_6ELZ_0951/1/3328:3330,
1/1/3373:3378
No text annotation
homologous
IL_8C3A_138
NA
IL_6ELZ_0961/1/3332:3337,
1/1/3367:3371
No text annotation
homologous
IL_8C3A_139
NA
IL_6ELZ_1001/2/44:64,
1/2/96:100
No text annotation
geometric
IL_5TBW_144
NA
IL_6ELZ_1011/2/64:66,
1/2/93:96
Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_6ELZ_1021/2/68:69,
1/2/89:91
Single bulged U
geometric
IL_5TBW_146
NA
IL_6ELZ_1031/6/26:27,
1/6/51:54
Multiple bulged bases
geometric
IL_4V88_392
NA
IL_6ELZ_1041/6/30:34,
1/6/45:48
No text annotation
IL_6ELZ_1051/6/36:38,
1/6/42:43
Single stack bend
geometric
IL_7KGA_003
NA

Problematic loops

#loop idProblemSequence
IL_6ELZ_016Kink-turn related
IL_6ELZ_024No text annotation
IL_6ELZ_029Single bulged U
IL_6ELZ_031No text annotation
IL_6ELZ_033Single bulged G
IL_6ELZ_049Isolated non-canonical cWW with bulges
IL_6ELZ_106No text annotation
IL_6ELZ_052No text annotation
IL_6ELZ_053Single bulged G, near cWW
IL_6ELZ_067Single bulged U
IL_6ELZ_116Minor groove platform
IL_6ELZ_068No text annotation
IL_6ELZ_069No text annotation
IL_6ELZ_070No text annotation
IL_6ELZ_072Single stack bend
IL_6ELZ_073No text annotation
IL_6ELZ_090Isolated non-canonical cWW pair
IL_6ELZ_094Isolated non-canonical cWW pair
IL_6ELZ_111Tandem non-canonical cWW pairs
IL_6ELZ_097Isolated non-canonical cWW pair
IL_6ELZ_118No text annotation
IL_6ELZ_098Double sheared; A in syn
IL_6ELZ_099Multiple bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6ELZ_0011/1/113:123,
1/1/149:158,
1/1/263:267
No text annotation
homologous
J3_8P9A_042
J3_69230.1
J3_6ELZ_0101/1/113:124,
1/1/144:158,
1/1/263:267
No text annotation
J3_6ELZ_0111/1/185:189,
1/1/205:214,
1/1/226:231
No text annotation
homologous
J3_8P9A_044
J3_97456.1
J3_6ELZ_0121/1/340:356,
1/1/363:368,
1/2/21:24
No text annotation
homologous
J3_8P9A_045
J3_07616.1
J3_6ELZ_0021/1/369:376,
1/1/403:404,
1/2/19:20
No text annotation
homologous
J3_5TBW_002
NA
J3_6ELZ_0131/1/369:379,
1/1/390:404,
1/2/19:20
No text annotation
homologous
J3_8C3A_049
NA
J3_6ELZ_0031/1/502:503,
1/1/588:597,
1/1/606:611
No text annotation
homologous
J3_5TBW_003
NA
J3_6ELZ_0041/1/1230:1232,
1/1/1256:1262,
1/1/1277:1279
No text annotation
homologous
J3_5TBW_007
NA
J3_6ELZ_0141/1/1230:1232,
1/1/1256:1266,
1/1/1275:1279
No text annotation
J3_6ELZ_0051/1/1479:1485,
1/1/1857:1859,
1/1/1871:1874
No text annotation
homologous
J3_8C3A_006
NA
J3_6ELZ_0061/1/1526:1531,
1/1/1591:1595,
1/1/1612:1613
No text annotation
homologous
J3_5TBW_010
NA
J3_6ELZ_0151/1/1537:1542,
1/1/1551:1560,
1/1/1579:1584
No text annotation
J3_6ELZ_0071/1/1631:1632,
1/1/1641:1645,
1/1/1810:1811
No text annotation
homologous
J3_8C3A_054
NA
J3_6ELZ_0161/1/1654:1658,
1/1/1791:1792,
1/1/1796:1801
No text annotation
homologous
J3_8C3A_055
NA
J3_6ELZ_0081/1/2886:2889,
1/1/2914:2916,
1/1/2930:2936
No text annotation
homologous
J3_8C3A_011
NA
J3_6ELZ_0171/1/3171:3176,
1/1/3212:3220,
1/1/3265:3279
No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_6ELZ_0091/1/3298:3300,
1/1/3314:3318,
1/1/3388:3390
No text annotation
homologous
J3_5TBW_015
NA
J3_6ELZ_0181/2/44:45,
1/2/58:64,
1/2/96:100
No text annotation
homologous
J3_8C3A_060
NA
J4_6ELZ_0011/1/112:113,
1/1/267:272,
1/1/293:299,
1/1/316:319
No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_6ELZ_0021/1/185:189,
1/1/205:208,
1/1/212:214,
1/1/226:231
No text annotation
homologous
J4_8P9A_013
J4_43318.1
J4_6ELZ_0031/1/1451:1457,
1/1/1475:1476,
1/1/1877:1880,
1/1/2352:2353
No text annotation
homologous
J4_8C3A_003
NA
J4_6ELZ_0041/1/1492:1496,
1/1/1520:1525,
1/1/1614:1615,
1/1/1829:1836
No text annotation
homologous
J4_8P9A_015
J4_47264.1
J4_6ELZ_0051/1/1674:1675,
1/1/1693:1694,
1/1/1752:1753,
1/1/1772:1773
No text annotation
homologous
J4_8P9A_016
J4_75575.1
J4_6ELZ_0061/1/3010:3012,
1/1/3042:3043,
1/1/3098:3100,
1/1/3134:3136
No text annotation
homologous
J4_8P9A_020
J4_37757.1
J5_6ELZ_0011/1/20:22,
1/2/35:42,
1/2/102:107,
1/2/115:116,
1/2/137:139
No text annotation
homologous
J5_8C3A_001
NA
J5_6ELZ_0021/1/658:663,
1/1/799:802,
1/1/941:944,
1/1/1375:1376,
1/1/1431:1437
No text annotation
homologous
J5_8C3A_002
NA
J5_6ELZ_0031/1/675:678,
1/1/702:706,
1/1/713:721,
1/1/749:751,
1/1/782:787
No text annotation
homologous
J5_8P9A_012
J5_56629.1
J6_6ELZ_0011/1/22:27,
1/1/58:68,
1/1/75:79,
1/1/106:110,
1/1/321:331,
1/2/32:35
No text annotation
J7_6ELZ_0011/1/949:958,
1/1/964:970,
1/1/1111:1117,
1/1/1141:1146,
1/1/1157:1161,
1/1/1338:1339,
1/1/1365:1370
No text annotation

Problematic loops

No problematic loops


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