HL_6ELZ_020

3D structure

PDB id

6ELZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6ELZ|1|1|U|879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ELZ|1|1|A|876
6ELZ|1|1|C|877
6ELZ|1|1|G|878
6ELZ|1|1|U|879
6ELZ|1|1|G|880
6ELZ|1|1|C|881
6ELZ|1|1|A|882
6ELZ|1|1|A|883
6ELZ|1|1|A|884
6ELZ|1|1|U|885

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain I

Nucleolar complex-associated protein 3

Chain l

60S ribosome subunit biogenesis protein NIP7

Chain q

25S rRNA (cytosine(2870)-C(5))-methyltransferase

Chain w

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase