HL_6ELZ_021

3D structure

PDB id

6ELZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ELZ_021 not in the Motif Atlas

Geometric match to HL_5Y7M_002

Geometric discrepancy: 0.1041

The information below is about HL_5Y7M_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6ELZ|1|1|C|911
6ELZ|1|1|G|912
6ELZ|1|1|A|913
6ELZ|1|1|A|914
6ELZ|1|1|A|915
6ELZ|1|1|G|916

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain I

Nucleolar complex-associated protein 3

Chain w

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase