HL_6ELZ_038

3D structure

PDB id

6ELZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

6ELZ|1|1|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ELZ_038 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1796

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

6ELZ|1|1|C|1759
6ELZ|1|1|A|1760
6ELZ|1|1|C|1761
6ELZ|1|1|C|1762
6ELZ|1|1|U|1763
6ELZ|1|1|U|1764
6ELZ|1|1|U|1765
6ELZ|1|1|G|1766

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain U

60S ribosomal protein L22-A

Chain X

60S ribosomal protein L25