HL_6ELZ_043

3D structure

PDB id

6ELZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6ELZ|1|1|G|2371, 6ELZ|1|1|A|2372, 6ELZ|1|1|A|2373

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ELZ_043 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1497

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

6ELZ|1|1|G|2369
6ELZ|1|1|G|2370
6ELZ|1|1|G|2371
6ELZ|1|1|A|2372
6ELZ|1|1|A|2373
6ELZ|1|1|C|2374
6ELZ|1|1|G|2375
6ELZ|1|1|G|2376
6ELZ|1|1|G|2377
6ELZ|1|1|C|2378

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain e

60S ribosomal protein L32

Chain s

Nuclear GTP-binding protein NUG1