HL_6ELZ_048

3D structure

PDB id

6ELZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ELZ_048 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.3136

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6ELZ|1|1|C|2963
6ELZ|1|1|G|2964
6ELZ|1|1|U|2965
6ELZ|1|1|G|2966
6ELZ|1|1|A|2967
6ELZ|1|1|G|2968

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain l

60S ribosome subunit biogenesis protein NIP7

Chain r

Ribosome biogenesis protein NSA2