3D structure

PDB id
6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CAUAG
Length
5 nucleotides
Bulged bases
6EM1|1|1|U|210, 6EM1|1|1|A|211
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6EM1_006 not in the Motif Atlas
Homologous match to HL_5TBW_006
Geometric discrepancy: 0.0907
The information below is about HL_5TBW_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_71121.1
Basepair signature
cWW-F
Number of instances in this motif group
24

Unit IDs

6EM1|1|1|C|208
6EM1|1|1|A|209
6EM1|1|1|U|210
6EM1|1|1|A|211
6EM1|1|1|G|212

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain C
60S ribosomal protein L4-A
Chain Y
60S ribosomal protein L26-A

Coloring options:


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