HL_6EM1_007
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 6EM1|1|1|G|218, 6EM1|1|1|A|219, 6EM1|1|1|G|220
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6EM1_007 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.1145
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
6EM1|1|1|G|216
6EM1|1|1|U|217
6EM1|1|1|G|218
6EM1|1|1|A|219
6EM1|1|1|G|220
6EM1|1|1|A|221
6EM1|1|1|A|222
6EM1|1|1|U|223
6EM1|1|1|C|224
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 3
- Protein MAK16
- Chain C
- 60S ribosomal protein L4-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain x
- Ribosome production factor 1
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