HL_6EM1_008

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

6EM1|1|1|G|281, 6EM1|1|1|G|282, 6EM1|1|1|G|283, 6EM1|1|1|A|284, 6EM1|1|1|A|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EM1_008 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.4611

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6EM1|1|1|U|278
6EM1|1|1|U|279
6EM1|1|1|U|280
6EM1|1|1|G|281
6EM1|1|1|G|282
6EM1|1|1|G|283
6EM1|1|1|A|284
6EM1|1|1|A|285
6EM1|1|1|U|286
6EM1|1|1|G|287

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain A

Ribosome biogenesis protein BRX1

Chain N

60S ribosomal protein L15-A