HL_6EM1_009

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUC

Length

4 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EM1_009 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1863

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6EM1|1|1|G|304
6EM1|1|1|U|305
6EM1|1|1|U|310
6EM1|1|1|C|311

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain A

Ribosome biogenesis protein BRX1

Chain N

60S ribosomal protein L15-A