HL_6EM1_031

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

6EM1|1|1|U|2842, 6EM1|1|1|U|2843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EM1_031 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2048

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6EM1|1|1|C|2840
6EM1|1|1|G|2841
6EM1|1|1|U|2842
6EM1|1|1|U|2843
6EM1|1|1|C|2844
6EM1|1|1|A|2845
6EM1|1|1|U|2846
6EM1|1|1|A|2847
6EM1|1|1|G|2848

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L20-A