HL_6EM1_038

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

6EM1|1|1|A|3243, 6EM1|1|1|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EM1_038 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.1633

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6EM1|1|1|C|3240
6EM1|1|1|G|3241
6EM1|1|1|G|3242
6EM1|1|1|A|3243
6EM1|1|1|A|3244
6EM1|1|1|A|3245
6EM1|1|1|G|3246
6EM1|1|1|G|3247

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L16-A