HL_6EML_014

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EML_014 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1329

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6EML|1|2|A|520
6EML|1|2|A|521
6EML|1|2|U|522
6EML|1|2|G|523
6EML|1|2|U|524
6EML|1|2|A|525
6EML|1|2|A|526
6EML|1|2|A|527
6EML|1|2|U|528
6EML|1|2|A|529
6EML|1|2|C|530
6EML|1|2|C|531
6EML|1|2|U|532

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain d

40S ribosomal protein S24-A

Chain t

Ribosome biogenesis protein TSR1