RNA 3D Hub //

6EML Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6EML_0011/2/7:17No text annotation
homologous
HL_4V88_186
NA
HL_6EML_0021/2/70:81No text annotation
geometric
HL_2Y8W_001
HL_40612.1
HL_6EML_0031/2/152:162No text annotation
HL_6EML_0051/2/230:235No text annotation
geometric
HL_5TBW_006
NA
HL_6EML_0061/2/243:250T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_6EML_0081/2/330:338GNRA related
homologous
HL_4V88_193
NA
HL_6EML_0091/2/368:373No text annotation
homologous
HL_4V88_194
NA
HL_6EML_0101/2/393:404No text annotation
homologous
HL_4V88_195
NA
HL_6EML_0111/2/414:419UNCG
homologous
HL_4V88_196
NA
HL_6EML_0121/2/450:456No text annotation
homologous
HL_4V88_197
NA
HL_6EML_0141/2/520:532No text annotation
geometric
HL_4V88_199
NA
HL_6EML_0151/2/569:574GNRA variation
homologous
HL_4V88_200
NA
HL_6EML_0181/2/764:772No text annotation
homologous
HL_4V88_203
NA
HL_6EML_0191/2/777:783No text annotation
HL_6EML_0211/2/900:909No text annotation
homologous
HL_4V88_206
NA
HL_6EML_0221/2/937:942GNRA
homologous
HL_4V88_207
NA
HL_6EML_0241/2/1055:1064No text annotation
homologous
HL_8P9A_212
HL_61768.1
HL_6EML_0251/2/1084:1089GNRA
homologous
HL_4V88_210
NA
HL_6EML_0261/2/1121:1126GNRA
homologous
HL_4V88_211
NA
HL_6EML_0281/2/1296:1301GNRA
homologous
HL_4V88_214
NA
HL_6EML_0321/2/1550:1561No text annotation
homologous
HL_4V88_219
NA
HL_6EML_0331/2/1594:1602No text annotation
homologous
HL_4V88_220
NA
HL_6EML_0351/2/1778:1783GNRA variation
homologous
HL_4V88_222
NA

Problematic loops

#loop idProblemSequence
HL_6EML_004No text annotation
HL_6EML_007Mini UNCG
HL_6EML_036No text annotation
HL_6EML_013No text annotation
HL_6EML_016No text annotation
HL_6EML_017No text annotation
HL_6EML_020No text annotation
HL_6EML_023No text annotation
HL_6EML_037No text annotation
HL_6EML_027No text annotation
HL_6EML_029No text annotation
HL_6EML_030No text annotation
HL_6EML_031GNRA
HL_6EML_034Externally structured

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6EML_0011/2/24:26,
1/2/600:601		Single bulged C
homologous
IL_4V88_384
NA
IL_6EML_0021/2/35:37,
1/2/471:473		Isolated non-canonical cWW pair
geometric
IL_4V88_385
NA
IL_6EML_0031/2/37:41,
1/2/466:471		Triple sheared related
geometric
IL_4V88_386
NA
IL_6EML_0041/2/42:48,
1/2/431:433		No text annotation
homologous
IL_4V88_387
NA
IL_6EML_0051/2/50:52,
1/2/428:429		Minor groove platform
homologous
IL_4V88_388
NA
IL_6EML_0061/2/58:63,
1/2/87:89		No text annotation
homologous
IL_4V88_389
NA
IL_6EML_0071/2/64:69,
1/2/82:86		No text annotation
homologous
IL_4V88_390
NA
IL_6EML_0081/2/109:112,
1/2/302:305		Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_6EML_0091/2/113:116,
1/2/300:301		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_6EML_0101/2/117:122,
1/2/295:299		No text annotation
homologous
IL_4V88_393
NA
IL_6EML_0111/2/143:149,
1/2/165:172		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_6EML_0121/2/150:152,
1/2/162:164		Isolated cWH basepair
geometric
IL_3R1C_012
IL_10892.2
IL_6EML_0131/2/186:189,
1/2/196:199		Double sheared
homologous
IL_4V88_396
NA
IL_6EML_0141/2/204:206,
1/2/259:263		Major groove platform with extra cWW
homologous
IL_4V88_397
NA
IL_6EML_0151/2/206:209,
1/2/256:259		Tandem non-canonical cWW pairs
geometric
IL_1L9A_002
NA
IL_6EML_0161/2/265:267,
1/2/288:289		Single bulged A
homologous
IL_4V88_399
NA
IL_6EML_0171/2/270:273,
1/2/283:285		No text annotation
homologous
IL_4V88_400
NA
IL_6EML_0181/2/275:276,
1/2/279:281		Single bulged U
geometric
IL_4V88_401
NA
IL_6EML_0191/2/311:316,
1/2/348:355		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_6EML_0201/2/318:323,
1/2/345:346		No text annotation
homologous
IL_4V88_403
NA
IL_6EML_0211/2/363:365,
1/2/376:381		No text annotation
homologous
IL_4V88_404
NA
IL_6EML_0851/2/388:391,
1/2/406:409		Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_15225.2
IL_6EML_0221/2/389:391,
1/2/406:408		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_6EML_0231/2/411:413,
1/2/420:422		Isolated near basepair
homologous
IL_4V88_406
NA
IL_6EML_0241/2/439:441,
1/2/463:464		Single bulged U
homologous
IL_4V88_407
NA
IL_6EML_0251/2/443:447,
1/2/460:461		C-loop
geometric
IL_5J7L_018
NA
IL_6EML_0261/2/447:448,
1/2/458:460		Single bulged G
geometric
IL_5J7L_019
NA
IL_6EML_0281/2/514:516,
1/2/536:543		No text annotation
IL_6EML_0291/2/517:518,
1/2/533:535		Minor groove platform
geometric
IL_4LFB_054
IL_34520.3
IL_6EML_0301/2/518:520,
1/2/532:533		Minor groove platform
geometric
IL_4V88_412
NA
IL_6EML_0311/2/550:557,
1/2/587:588		SSU/LSU pseudoknot
geometric
IL_6CZR_132
NA
IL_6EML_0321/2/557:559,
1/2/586:587		Single bulged U
homologous
IL_4V88_414
NA
IL_6EML_0331/2/562:568,
1/2/575:583		Kink-turn related
homologous
IL_4V88_415
NA
IL_6EML_0341/2/616:622,
1/2/1104:1105		No text annotation
homologous
IL_4V88_416
NA
IL_6EML_0351/2/624:626,
1/2/973:975		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_6EML_0361/2/627:631,
1/2/968:972		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_6EML_0901/2/746:747,
1/2/802:805		No text annotation
homologous
IL_8CRE_428
IL_73108.2
IL_6EML_0401/2/748:750,
1/2/799:801		Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_6EML_0411/2/751:759,
1/2/791:798		No text annotation
homologous
IL_4V88_425
NA
IL_6EML_0421/2/865:866,
1/2/962:965		Major groove platform; stack outside cWW
geometric
IL_4V88_428
NA
IL_6EML_0431/2/868:870,
1/2/957:960		Isolated non-canonical cWW pair
geometric
IL_3TD0_005
NA
IL_6EML_0441/2/871:874,
1/2/953:956		Tandem non-canonical cWW pairs
geometric
IL_4V88_430
NA
IL_6EML_0451/2/874:878,
1/2/950:953		Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_6EML_0461/2/884:888,
1/2/924:928		Triple non-canonical cWW pairs
geometric
IL_4LFB_065
IL_71154.3
IL_6EML_0471/2/893:899,
1/2/910:919		Kink-turn related
homologous
IL_8C3A_440
NA
IL_6EML_0481/2/985:990,
1/2/1014:1016		Other IL
geometric
IL_4V88_435
NA
IL_6EML_0491/2/990:994,
1/2/1010:1014		tSH-tHW-tHS
homologous
IL_4V88_436
NA
IL_6EML_0501/2/1034:1036,
1/2/1095:1101		No text annotation
homologous
IL_4V88_437
NA
IL_6EML_0511/2/1041:1044,
1/2/1074:1077		Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_6EML_0521/2/1051:1053,
1/2/1066:1067		Single bulged U
homologous
IL_4V88_439
NA
IL_6EML_0531/2/1111:1118,
1/2/1129:1134		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_6EML_0551/2/1157:1160,
1/2/1617:1621		C-loop
homologous
IL_4V88_443
NA
IL_6EML_0561/2/1173:1175,
1/2/1464:1466		Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_6EML_0571/2/1178:1179,
1/2/1459:1461		Minor groove platform
homologous
IL_4V88_445
NA
IL_6EML_0911/2/1224:1230,
1/2/1257:1259		No text annotation
IL_6EML_0921/2/1224:1233,
1/2/1252:1259		No text annotation
homologous
IL_8P9A_470
IL_28304.1
IL_6EML_0671/2/1290:1292,
1/2/1323:1325		Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_6EML_0701/2/1345:1348,
1/2/1377:1380		Minor groove platform
homologous
IL_4V88_456
NA
IL_6EML_0731/2/1480:1487,
1/2/1519:1527		No text annotation
homologous
IL_4V88_459
NA
IL_6EML_0741/2/1488:1494,
1/2/1513:1518		180 degree turn
homologous
IL_4V88_460
NA
IL_6EML_0781/2/1653:1656,
1/2/1744:1747		Double sheared
homologous
IL_4V88_468
NA
IL_6EML_0791/2/1656:1658,
1/2/1743:1744		No text annotation
IL_6EML_0801/2/1665:1667,
1/2/1734:1736		Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_6EML_0811/2/1669:1672,
1/2/1729:1732		Double sheared
homologous
IL_4V88_471
NA
IL_6EML_0821/2/1672:1674,
1/2/1727:1729		Isolated non-canonical cWW pair
geometric
IL_4V88_472
NA
IL_6EML_0831/2/1675:1678,
1/2/1723:1726		Tandem non-canonical cWW pairs
geometric
IL_4V88_473
NA
IL_6EML_0841/2/1678:1682,
1/2/1719:1723		Triple sheared
homologous
IL_4V88_474
NA

Problematic loops

#loop idProblemSequence
IL_6EML_027No text annotation
IL_6EML_037Isolated non-canonical cWW pair
IL_6EML_038No text annotation
IL_6EML_039Major groove minor groove platform with extra cWW
IL_6EML_086No text annotation
IL_6EML_087No text annotation
IL_6EML_088Single bulged G
IL_6EML_054Isolated non-canonical cWW pair
IL_6EML_058No text annotation
IL_6EML_059Isolated non-canonical cWW pair
IL_6EML_060No text annotation
IL_6EML_089No text annotation
IL_6EML_061No text annotation
IL_6EML_062No text annotation
IL_6EML_063Single bulged U
IL_6EML_064Isolated non-canonical cWW pair
IL_6EML_065No text annotation
IL_6EML_066Single bulged A
IL_6EML_068Minor groove platform
IL_6EML_069Isolated non-canonical cWW pair
IL_6EML_071Isolated non-canonical cWW pair
IL_6EML_072Major groove platform; stack outside cWW
IL_6EML_075Tandem non-canonical cWW pairs
IL_6EML_076No text annotation
IL_6EML_077Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6EML_0011/2/41:42,
1/2/433:439,
1/2/464:466		No text annotation
geometric
J3_4V88_078
NA
J3_6EML_0131/2/41:48,
1/2/431:439,
1/2/464:466		No text annotation
homologous
J3_8C3A_083
NA
J3_6EML_0141/2/213:230,
1/2/235:243,
1/2/250:252		No text annotation
J3_6EML_0021/2/633:635,
1/2/861:865,
1/2/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_6EML_0151/2/633:635,
1/2/861:866,
1/2/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.5
J3_6EML_0031/2/760:763,
1/2/773:775,
1/2/785:790		No text annotation
homologous
J3_4V88_032
NA
J3_6EML_0041/2/881:884,
1/2/928:936,
1/2/943:947		No text annotation
homologous
J3_4V88_033
NA
J3_6EML_0051/2/1037:1039,
1/2/1079:1083,
1/2/1090:1094		No text annotation
homologous
J3_4V88_034
NA
J3_6EML_0061/2/1161:1164,
1/2/1581:1587,
1/2/1609:1616		No text annotation
homologous
J3_4V88_035
NA
J3_6EML_0071/2/1168:1171,
1/2/1468:1470,
1/2/1574:1577		No text annotation
homologous
J3_4V88_036
NA
J3_6EML_0101/2/1293:1294,
1/2/1303:1306,
1/2/1318:1322		No text annotation
geometric
J3_4V88_082
NA
J3_6EML_0161/2/1293:1294,
1/2/1303:1308,
1/2/1317:1322		No text annotation
J4_6EML_0011/2/99:107,
1/2/307:309,
1/2/357:361,
1/2/383:384		No text annotation
homologous
J4_8P9A_021
J4_15241.2
J4_6EML_0021/2/622:624,
1/2/975:980,
1/2/1021:1032,
1/2/1103:1104		No text annotation
homologous
J4_8C3A_022
NA
J5_6EML_0011/2/31:35,
1/2/473:479,
1/2/509:516,
1/2/536:546,
1/2/592:595		No text annotation
J5_6EML_0021/2/54:57,
1/2/90:97,
1/2/386:388,
1/2/409:413,
1/2/420:426		No text annotation
J5_6EML_0031/2/124:143,
1/2/172:182,
1/2/203:204,
1/2/263:265,
1/2/289:293		No text annotation
J5_6EML_0041/2/124:143,
1/2/172:182,
1/2/203:204,
1/2/263:267,
1/2/288:293		No text annotation
J5_6EML_0061/2/636:641,
1/2/693:702,
1/2/736:744,
1/2/807:824,
1/2/848:860		No text annotation

Problematic loops

#loop idProblemSequence
J3_6EML_018No text annotation
J3_6EML_008No text annotation
J3_6EML_009No text annotation
J3_6EML_011No text annotation
J3_6EML_017No text annotation
J3_6EML_012No text annotation
J5_6EML_005No text annotation

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