HL_6EML_020

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUCUAUUUUGUUGGUUUCUAGGA

Length

23 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EML|1|2|U|825
6EML|1|2|U|826
6EML|1|2|C|827
6EML|1|2|U|828
6EML|1|2|A|829
6EML|1|2|U|830
6EML|1|2|U|831
6EML|1|2|U|832
6EML|1|2|U|833
6EML|1|2|G|834
6EML|1|2|U|835
6EML|1|2|U|836
6EML|1|2|G|837
6EML|1|2|G|838
6EML|1|2|U|839
6EML|1|2|U|840
6EML|1|2|U|841
6EML|1|2|C|842
6EML|1|2|U|843
6EML|1|2|A|844
6EML|1|2|G|845
6EML|1|2|G|846
6EML|1|2|A|847

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S11-A