HL_6EML_033

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

6EML|1|2|G|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EML_033 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.2858

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6EML|1|2|G|1594
6EML|1|2|U|1595
6EML|1|2|C|1596
6EML|1|2|A|1597
6EML|1|2|U|1598
6EML|1|2|C|1599
6EML|1|2|A|1600
6EML|1|2|G|1601
6EML|1|2|C|1602

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S16-A

Chain I

40S ribosomal protein S19-A