HL_6EML_037

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACAGAUUGAGAGCUCUUU

Length

18 nucleotides

Bulged bases

6EML|1|2|C|1235, 6EML|1|2|G|1241, 6EML|1|2|G|1243

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EML|1|2|A|1234
6EML|1|2|C|1235
6EML|1|2|A|1236
6EML|1|2|G|1237
6EML|1|2|A|1238
6EML|1|2|U|1239
6EML|1|2|U|1240
6EML|1|2|G|1241
6EML|1|2|A|1242
6EML|1|2|G|1243
6EML|1|2|A|1244
6EML|1|2|G|1245
6EML|1|2|C|1246
6EML|1|2|U|1247
6EML|1|2|C|1248
6EML|1|2|U|1249
6EML|1|2|U|1250
6EML|1|2|U|1251

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S12

Chain E

40S ribosomal protein S15

Chain N

Ubiquitin-40S ribosomal protein S31

Chain e

Essential nuclear protein 1