HL_6ENF_081

3D structure

PDB id

6ENF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6ENF|1|a|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ENF_081 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2805

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6ENF|1|a|G|462
6ENF|1|a|U|463
6ENF|1|a|U|464
6ENF|1|a|A|465
6ENF|1|a|A|466
6ENF|1|a|U|467
6ENF|1|a|A|468
6ENF|1|a|C|469
6ENF|1|a|C|470

Current chains

Chain a

16S ribosomal RNA

Nearby chains