Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6ENF_0011/A/59:68No text annotation
homologous
HL_5J7L_134
NA
HL_6ENF_0021/A/87:95No text annotation
homologous
HL_5J7L_135
NA
HL_6ENF_0031/A/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.6
HL_6ENF_0041/A/137:142No text annotation
HL_6ENF_0051/A/158:168No text annotation
homologous
HL_5J7L_138
NA
HL_6ENF_0061/A/194:201No text annotation
homologous
HL_4WF9_006
HL_48677.1
HL_6ENF_0071/A/225:230No text annotation
homologous
HL_5J7L_140
NA
HL_6ENF_0081/A/246:252No text annotation
homologous
HL_5J7L_141
NA
HL_6ENF_0091/A/305:312T-loop with 1 bulged base
homologous
HL_7A0S_010
HL_13999.1
HL_6ENF_0101/A/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_6ENF_0111/A/382:392No text annotation
homologous
HL_5J7L_145
NA
HL_6ENF_0121/A/410:417Pseudoknot geometry
homologous
HL_7A0S_014
HL_30680.4
HL_6ENF_0131/A/462:467GNRA
homologous
HL_4WF9_015
HL_34789.1
HL_6ENF_0141/A/487:493GNRA
homologous
HL_5J7L_148
NA
HL_6ENF_0161/A/566:575T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
NA
HL_6ENF_0171/A/611:617No text annotation
homologous
HL_5J7L_151
NA
HL_6ENF_0181/A/629:634GNRA
homologous
HL_5J7L_152
NA
HL_6ENF_0191/A/641:647No text annotation
homologous
HL_5J7L_153
NA
HL_6ENF_0201/A/712:719GNRA wlth tandem sheared
homologous
HL_5J7L_154
NA
HL_6ENF_0211/A/744:753No text annotation
homologous
HL_7A0S_022
HL_50204.1
HL_6ENF_0221/A/779:785UNCG variation
geometric
HL_2NUE_001
NA
HL_6ENF_0231/A/826:831No text annotation
homologous
HL_5J7L_157
NA
HL_6ENF_0251/A/954:963tRNA anticodon loop
geometric
HL_3RG5_006
HL_45359.1
HL_6ENF_0261/A/978:985No text annotation
homologous
HL_5J7L_160
NA
HL_6ENF_0281/A/1167:1182No text annotation
HL_6ENF_0291/A/1222:1227GNRA
homologous
HL_7A0S_031
HL_34789.1
HL_6ENF_0301/A/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
NA
HL_6ENF_0311/A/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
NA
HL_6ENF_0321/A/1363:1368GNRA
homologous
HL_5J7L_167
NA
HL_6ENF_0331/A/1389:1398No text annotation
homologous
HL_5J7L_168
NA
HL_6ENF_0341/A/1451:1459Mini UNCG
geometric
HL_4L8H_001
HL_90436.1
HL_6ENF_0351/A/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
NA
HL_6ENF_0371/A/1565:1568Mini UNCG
homologous
HL_7A0S_039
HL_90436.1
HL_6ENF_0381/A/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_6ENF_0391/A/1630:1636GNRA
homologous
HL_5J7L_174
NA
HL_6ENF_0401/A/1691:1696UNCG
geometric
HL_4PMI_004
NA
HL_6ENF_0421/A/1752:1756No text annotation
homologous
HL_5J7L_177
NA
HL_6ENF_0431/A/1777:1787No text annotation
homologous
HL_4WF9_043
HL_87681.1
HL_6ENF_0441/A/1806:1811GNRA related
homologous
HL_5J7L_179
NA
HL_6ENF_0451/A/1868:1873UNCG variation
geometric
HL_2CZJ_007
NA
HL_6ENF_0461/A/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_6ENF_0471/A/1949:1957No text annotation
homologous
HL_5J7L_182
NA
HL_6ENF_0481/A/2027:2036No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_6ENF_0501/A/2209:2215No text annotation
homologous
HL_5J7L_185
NA
HL_6ENF_0511/A/2248:2256No text annotation
homologous
HL_7A0S_052
HL_11974.1
HL_6ENF_0521/A/2264:2276No text annotation
homologous
HL_5J7L_187
NA
HL_6ENF_1101/A/2304:2312No text annotation
homologous
HL_5J7L_219
NA
HL_6ENF_0541/A/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
NA
HL_6ENF_0551/A/2356:2361GNRA
homologous
HL_5J7L_190
NA
HL_6ENF_0561/A/2374:2379GNRA
homologous
HL_5J7L_191
NA
HL_6ENF_0571/A/2404:2413No text annotation
homologous
HL_7A0S_058
HL_51853.1
HL_6ENF_0581/A/2471:2479No text annotation
homologous
HL_4WF9_056
HL_52011.1
HL_6ENF_0591/A/2528:2535GNRA variation
homologous
HL_5J7L_194
NA
HL_6ENF_0601/A/2551:2557No text annotation
homologous
HL_5J7L_195
NA
HL_6ENF_0611/A/2594:2599GNRA
homologous
HL_7RQB_063
NA
HL_6ENF_0621/A/2658:2663GNRA
homologous
HL_5J7L_197
NA
HL_6ENF_0631/A/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
NA
HL_6ENF_0641/A/2745:2759No text annotation
homologous
HL_4WF9_062
HL_53269.1
HL_6ENF_1061/A/2795:2801UNCG variation
homologous
HL_5J7L_200
NA
HL_6ENF_0661/A/2819:2827No text annotation
homologous
HL_5J7L_201
NA
HL_6ENF_0671/A/2856:2861GNRA
homologous
HL_7A0S_068
HL_34789.1
HL_6ENF_1071/B/34:48No text annotation
homologous
HL_5J7L_215
NA
HL_6ENF_0681/B/38:44No text annotation
geometric
HL_5NFV_001
HL_69752.3
HL_6ENF_0691/B/86:90Mini UNCG
homologous
HL_5J7L_204
NA
HL_6ENF_0701/a/12:22No text annotation
homologous
HL_5J7L_001
NA
HL_6ENF_0721/a/158:163GNRA
homologous
HL_5J7L_003
NA
HL_6ENF_0731/a/186:191GNRA
homologous
HL_5J7L_004
NA
HL_6ENF_0751/a/259:267GNRA related
homologous
HL_5J7L_006
NA
HL_6ENF_0761/a/296:301GNRA
homologous
HL_5J7L_007
NA
HL_6ENF_0771/a/320:333No text annotation
homologous
HL_5J7L_008
NA
HL_6ENF_0781/a/342:347UNCG
homologous
HL_4LFB_009
HL_61337.1
HL_6ENF_0791/a/379:384GNRA
homologous
HL_5J7L_010
NA
HL_6ENF_0801/a/419:424UNCG
homologous
HL_5J7L_011
NA
HL_6ENF_0811/a/462:470GNRA wlth extra near cWW
homologous
HL_5J7L_012
NA
HL_6ENF_0821/a/522:527No text annotation
geometric
HL_4WF9_003
HL_75660.6
HL_6ENF_0831/a/614:626No text annotation
HL_6ENF_0841/a/689:698No text annotation
homologous
HL_5J7L_015
NA
HL_6ENF_0851/a/726:731GNRA
homologous
HL_4LFB_016
HL_34789.1
HL_6ENF_0861/a/786:796No text annotation
homologous
HL_5J7L_017
NA
HL_6ENF_0881/a/862:867GNRA
homologous
HL_5J7L_019
NA
HL_6ENF_0891/a/897:902GNRA
homologous
HL_4LFB_020
HL_34789.1
HL_6ENF_0901/a/963:972No text annotation
homologous
HL_5J7L_021
NA
HL_6ENF_0911/a/1012:1017GNRA
homologous
HL_4LFB_022
HL_34789.1
HL_6ENF_0931/a/1076:1081GNRA
homologous
HL_5J7L_023
NA
HL_6ENF_0941/a/1089:1096T-loop related
homologous
HL_4LFB_025
HL_63894.1
HL_6ENF_0951/a/1134:1140No text annotation
homologous
HL_6CZR_097
NA
HL_6ENF_0961/a/1165:1171GNRA
homologous
HL_4LFB_027
HL_34789.1
HL_6ENF_0971/a/1265:1270GNRA
homologous
HL_5J7L_027
NA
HL_6ENF_0981/a/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_5J7L_028
NA
HL_6ENF_0991/a/1356:1366No text annotation
homologous
HL_4LFB_030
HL_86432.1
HL_6ENF_1001/a/1449:1454UNCG
homologous
HL_5J7L_030
NA
HL_6ENF_1011/a/1515:1520GNRA
homologous
HL_6CZR_103
NA
HL_6ENF_1021/x/13:22No text annotation
homologous
HL_6PMO_003
NA
HL_6ENF_1031/x/31:39tRNA anticodon loop
homologous
HL_6UFG_007
NA
HL_6ENF_1041/x/53:61T-loop with 2 stacked bulged bases
homologous
HL_6UGG_006
HL_33597.1

Problematic loops

#loop idProblemSequence
HL_6ENF_105No text annotation
HL_6ENF_015No text annotation
HL_6ENF_109No text annotation
HL_6ENF_024No text annotation
HL_6ENF_027No text annotation
HL_6ENF_036No text annotation
HL_6ENF_041No text annotation
HL_6ENF_049No text annotation
HL_6ENF_053No text annotation
HL_6ENF_065Mini UNCG
HL_6ENF_108No text annotation
HL_6ENF_071No text annotation
HL_6ENF_074Mini UNCG
HL_6ENF_087No text annotation
HL_6ENF_092No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6ENF_0011/A/24:30,
1/A/510:516
Triple sheared with non-canonical cWW
geometric
IL_7RQB_001
NA
IL_6ENF_0021/A/36:37,
1/A/442:444
Single bulged A
homologous
IL_7RQB_002
NA
IL_6ENF_0031/A/43:44,
1/A/434:436
Minor groove platform
homologous
IL_5J7L_247
NA
IL_6ENF_0041/A/81:85,
1/A/97:105
No text annotation
homologous
IL_5J7L_248
NA
IL_6ENF_0051/A/183:184,
1/A/212:214
Single stack bend
homologous
IL_7A0S_005
IL_15011.1
IL_6ENF_0061/A/188:194,
1/A/201:208
8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_006
IL_62167.1
IL_6ENF_0071/A/239:245,
1/A/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
NA
IL_6ENF_0081/A/269:271,
1/A/366:370
No text annotation
homologous
IL_5J7L_252
NA
IL_6ENF_0101/A/293:295,
1/A/343:347
No text annotation
homologous
IL_7RQB_013
NA
IL_6ENF_0111/A/481:484,
1/A/496:509
No text annotation
geometric
IL_5J7L_255
NA
IL_6ENF_0121/A/536:539,
1/A/554:557
Double sheared
homologous
IL_5J7L_256
NA
IL_6ENF_0131/A/564:566,
1/A/575:577
Isolated non-canonical cWW pair
geometric
IL_4WF9_017
IL_71625.1
IL_6ENF_0141/A/606:610,
1/A/618:622
AAA cross-strand stack
homologous
IL_5J7L_258
NA
IL_6ENF_0151/A/672:674,
1/A/806:808
No text annotation
geometric
IL_7RQB_017
NA
IL_6ENF_0161/A/674:678,
1/A/799:806
tHW-tHW cross-strand stack
homologous
IL_7RQB_018
NA
IL_6ENF_0171/A/697:698,
1/A/763:765
Single bulged A
geometric
IL_4V9F_025
IL_14190.1
IL_6ENF_0181/A/702:703,
1/A/728:730
Single bulged G
geometric
IL_4V9F_026
IL_28408.1
IL_6ENF_0191/A/703:707,
1/A/724:728
Triple sheared
homologous
IL_4WF9_024
IL_15190.1
IL_6ENF_0201/A/738:740,
1/A/757:758
Major groove platform
homologous
IL_5J7L_264
NA
IL_6ENF_0211/A/775:777,
1/A/787:791
Multiple bulged bases
geometric
IL_4V9F_030
IL_57881.1
IL_6ENF_0221/A/837:838,
1/A/940:942
Single stack bend
homologous
IL_5J7L_266
NA
IL_6ENF_0231/A/844:847,
1/A/933:934
90 degree turn
homologous
IL_5J7L_267
NA
IL_6ENF_1781/A/844:848,
1/A/930:934
No text annotation
homologous
IL_5J7L_399
NA
IL_6ENF_0241/A/847:848,
1/A/930:933
Stack outside cWW
geometric
IL_5J7L_268
NA
IL_6ENF_0251/A/850:851,
1/A/926:928
Single stack bend
homologous
IL_5J7L_269
NA
IL_6ENF_0261/A/856:862,
1/A/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
NA
IL_6ENF_0271/A/862:863,
1/A/913:915
Single bulged G
geometric
IL_5J7L_271
NA
IL_6ENF_0281/A/864:868,
1/A/909:912
C-loop
homologous
IL_7RQB_029
NA
IL_6ENF_1791/A/870:872,
1/A/905:907
Isolated cWS basepair
homologous
IL_4WF9_034
NA
IL_6ENF_0311/A/994:996,
1/A/1159:1160
Single bulged C
homologous
IL_7RQB_035
NA
IL_6ENF_0321/A/998:1002,
1/A/1153:1157
UAA/GAN
homologous
IL_7A0S_033
IL_08938.1
IL_6ENF_0331/A/1004:1011,
1/A/1150:1151
SSU/LSU pseudoknot
geometric
IL_5J7L_278
NA
IL_6ENF_0341/A/1011:1013,
1/A/1149:1150
Single bulged U
homologous
IL_5J7L_279
NA
IL_6ENF_0351/A/1018:1024,
1/A/1140:1144
Kink-turn related
homologous
IL_4WF9_039
IL_57188.6
IL_6ENF_0361/A/1024:1030,
1/A/1124:1140
No text annotation
geometric
IL_5J7L_281
NA
IL_6ENF_0371/A/1031:1034,
1/A/1121:1123
Isolated non-canonical cWW pair
homologous
IL_7A0S_038
IL_30229.1
IL_6ENF_0381/A/1038:1041,
1/A/1114:1117
Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
NA
IL_6ENF_0411/A/1196:1198,
1/A/1247:1250
Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.4
IL_6ENF_0421/A/1202:1206,
1/A/1240:1243
No text annotation
homologous
IL_5J7L_287
NA
IL_6ENF_0431/A/1208:1215,
1/A/1234:1238
Kink-turn
homologous
IL_5J7L_288
NA
IL_6ENF_0441/A/1262:1269,
1/A/2011:2017
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_6ENF_0451/A/1310:1313,
1/A/1603:1604
Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_6ENF_0461/A/1319:1323,
1/A/1331:1333
C-loop
homologous
IL_5J7L_291
NA
IL_6ENF_1901/A/1351:1353,
1/A/1379:1380
Single stack bend with SAM intercalation
geometric
IL_6FZ0_001
NA
IL_6ENF_0471/A/1351:1355,
1/A/1376:1380
UAA/GAN
homologous
IL_7A0S_048
IL_89021.3
IL_6ENF_1911/A/1353:1355,
1/A/1376:1379
No text annotation
IL_6ENF_0481/A/1357:1361,
1/A/1370:1374
tSH-tHW-tHS
homologous
IL_5J7L_293
NA
IL_6ENF_0501/A/1417:1421,
1/A/1577:1581
UAA/GAN
homologous
IL_5J7L_295
NA
IL_6ENF_0511/A/1432:1435,
1/A/1557:1561
Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
NA
IL_6ENF_0521/A/1437:1440,
1/A/1551:1555
tSH-tHW
homologous
IL_5J7L_297
NA
IL_6ENF_0531/A/1450:1451,
1/A/1459:1461
Single bulged U
homologous
IL_5J7L_298
NA
IL_6ENF_0541/A/1468:1471,
1/A/1520:1524
No text annotation
homologous
IL_5J7L_299
NA
IL_6ENF_0551/A/1474:1478,
1/A/1513:1517
tSH-tHW-tHS
homologous
IL_5J7L_300
NA
IL_6ENF_0561/A/1481:1482,
1/A/1507:1510
180 degree turn
homologous
IL_5J7L_301
NA
IL_6ENF_0571/A/1489:1491,
1/A/1499:1500
Single bulged A
homologous
IL_7RQB_062
NA
IL_6ENF_1811/A/1526:1529,
1/A/1542:1546
UAA/GAN variation
homologous
IL_5J7L_303
NA
IL_6ENF_0591/A/1651:1656,
1/A/2004:2006
No text annotation
homologous
IL_5J7L_304
NA
IL_6ENF_0601/A/1663:1665,
1/A/1995:1997
Isolated tWW turn
homologous
IL_4WF9_063
IL_10432.1
IL_6ENF_0611/A/1666:1669,
1/A/1993:1994
Major groove platform; stack outside cWW
homologous
IL_7RQB_066
NA
IL_6ENF_1821/A/1666:1674,
1/A/1990:1994
No text annotation
homologous
IL_4WF9_117
IL_80252.1
IL_6ENF_0621/A/1669:1674,
1/A/1990:1993
Intercalated tWH
geometric
IL_4WF9_065
IL_28217.1
IL_6ENF_0631/A/1686:1691,
1/A/1696:1702
tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA
IL_6ENF_0641/A/1712:1718,
1/A/1742:1746
6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
NA
IL_6ENF_0651/A/1720:1724,
1/A/1736:1740
Triple sheared
homologous
IL_5J7L_310
NA
IL_6ENF_0661/A/1727:1728,
1/A/1731:1733
Single bulged C
homologous
IL_5J7L_311
NA
IL_6ENF_0671/A/1770:1771,
1/A/1980:1982
Single bulged A
homologous
IL_4WF9_068
IL_14190.1
IL_6ENF_0681/A/1798:1804,
1/A/1813:1821
Kink-turn related
homologous
IL_5J7L_313
NA
IL_6ENF_0691/A/1837:1840,
1/A/1902:1903
Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_6ENF_0701/A/1841:1842,
1/A/1898:1901
Major groove intercalation
homologous
IL_5J7L_315
NA
IL_6ENF_0711/A/1846:1849,
1/A/1893:1894
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
NA
IL_6ENF_1831/A/1851:1860,
1/A/1882:1891
No text annotation
homologous
IL_5J7L_387
NA
IL_6ENF_0721/A/1864:1867,
1/A/1874:1878
UAA/GAN related
homologous
IL_5J7L_317
NA
IL_6ENF_0731/A/1933:1934,
1/A/1964:1967
Bulged stacked bases
homologous
IL_7RQB_076
NA
IL_6ENF_0741/A/1934:1945,
1/A/1961:1964
No text annotation
geometric
IL_7A0S_072
IL_04332.3
IL_6ENF_0751/A/2050:2052,
1/A/2617:2618
Major groove platform
homologous
IL_5J7L_320
NA
IL_6ENF_0761/A/2054:2056,
1/A/2612:2615
No text annotation
homologous
IL_5J7L_321
NA
IL_6ENF_0771/A/2067:2070,
1/A/2441:2443
Isolated non-canonical cWW pair
geometric
IL_5C5W_002
NA
IL_6ENF_0781/A/2070:2071,
1/A/2438:2441
Minor groove platform
homologous
IL_7RQB_081
NA
IL_6ENF_0791/A/2081:2083,
1/A/2236:2239
Isolated tHS basepair with bulges
homologous
IL_5J7L_325
NA
IL_6ENF_0801/A/2085:2087,
1/A/2232:2234
Isolated non-canonical cWW pair
homologous
IL_7A0S_078
IL_71625.1
IL_6ENF_0811/A/2202:2204,
1/A/2220:2221
Single bulged U
homologous
IL_5J7L_331
NA
IL_6ENF_0821/A/2350:2353,
1/A/2364:2367
Double sheared
homologous
IL_7RQB_089
NA
IL_6ENF_0831/A/2401:2403,
1/A/2414:2415
No text annotation
geometric
IL_9AXU_122
IL_97561.1
IL_6ENF_0841/A/2453:2454,
1/A/2498:2500
Single stack bend
homologous
IL_4WF9_089
IL_15011.1
IL_6ENF_0851/A/2454:2455,
1/A/2496:2498
Major groove platform
geometric
IL_4LFB_024
IL_48076.7
IL_6ENF_0861/A/2456:2459,
1/A/2493:2495
Major groove platform with extra pair
homologous
IL_7RQB_093
NA
IL_6ENF_0871/A/2459:2461,
1/A/2489:2493
Major groove minor groove platform with extra cWW
geometric
IL_4V9F_084
IL_36931.1
IL_6ENF_0881/A/2466:2470,
1/A/2480:2484
Double sheared with non-canonical cWW
homologous
IL_4WF9_093
IL_87767.1
IL_6ENF_0891/A/2507:2509,
1/A/2579:2582
Major groove platform with extra pair
geometric
IL_7RQB_093
NA
IL_6ENF_0901/A/2510:2512,
1/A/2574:2578
Isolated non-canonical cWW with bulges
geometric
IL_4WF9_095
IL_68118.1
IL_6ENF_0911/A/2512:2513,
1/A/2571:2574
No text annotation
homologous
IL_5J7L_341
NA
IL_6ENF_0921/A/2522:2523,
1/A/2540:2543
Major groove platform with intercalation
homologous
IL_5J7L_342
NA
IL_6ENF_0941/A/2591:2592,
1/A/2601:2603
Single bulged A
homologous
IL_7RQB_101
NA
IL_6ENF_0951/A/2636:2640,
1/A/2774:2782
tSH-tHS-tHW
homologous
IL_5J7L_345
NA
IL_6ENF_0961/A/2652:2658,
1/A/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7A0S_094
IL_16458.5
IL_6ENF_0971/A/2680:2684,
1/A/2725:2727
C-loop
homologous
IL_5J7L_347
NA
IL_6ENF_0981/A/2687:2691,
1/A/2718:2722
UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_6ENF_0991/A/2695:2696,
1/A/2711:2714
Multiple bulged bases
homologous
IL_4WF9_103
IL_44609.1
IL_6ENF_1001/A/2737:2742,
1/A/2762:2767
UAA/GAN with extra cWW
homologous
IL_5J7L_350
NA
IL_6ENF_1011/A/2795:2796,
1/A/2799:2801
Single bulged A
geometric
IL_7RQB_059
NA
IL_6ENF_1021/A/2806:2811,
1/A/2889:2892
No text annotation
homologous
IL_5J7L_351
NA
IL_6ENF_1031/A/2838:2839,
1/A/2878:2880
Major groove intercalation
homologous
IL_4WF9_106
IL_78536.1
IL_6ENF_1041/A/2843:2846,
1/A/2870:2874
Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
NA
IL_6ENF_1051/A/2847:2852,
1/A/2865:2869
tHS double platform
homologous
IL_5J7L_354
NA
IL_6ENF_1061/B/17:18,
1/B/65:67
Major groove intercalation
homologous
IL_4WF9_112
IL_14190.1
IL_6ENF_1071/B/23:28,
1/B/56:60
No text annotation
homologous
IL_5J7L_356
NA
IL_6ENF_1081/B/30:31,
1/B/51:54
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_357
NA
IL_6ENF_1091/B/34:38,
1/B/44:48
Symmetric double minor groove platform
homologous
IL_5J7L_358
NA
IL_6ENF_1101/B/71:79,
1/B/97:105
Bacterial 5S Loop E
homologous
IL_5J7L_359
NA
IL_6ENF_1111/a/30:32,
1/a/552:553
Single bulged G
homologous
IL_5J7L_001
NA
IL_6ENF_1121/a/44:45,
1/a/396:398
Single bulged A
homologous
IL_5J7L_002
NA
IL_6ENF_1131/a/47:54,
1/a/357:361
No text annotation
IL_6ENF_1141/a/54:56,
1/a/356:357
Minor groove platform
homologous
IL_4LFB_004
IL_34520.1
IL_6ENF_1151/a/63:66,
1/a/103:104
Multiple bulged bases
homologous
IL_4LFB_005
IL_71421.1
IL_6ENF_1161/a/67:69,
1/a/99:102
Minor groove platform with extra cWW
homologous
IL_5J7L_006
NA
IL_6ENF_1921/a/70:73,
1/a/97:98
Minor groove platform
homologous
IL_5J7L_007
NA
IL_6ENF_1191/a/128:131,
1/a/231:233
Isolated non-canonical cWW pair
homologous
IL_5J7L_009
NA
IL_6ENF_1201/a/132:136,
1/a/227:230
No text annotation
homologous
IL_4LFB_008
IL_60988.1
IL_6ENF_1211/a/144:146,
1/a/176:178
Isolated cWH basepair
homologous
IL_5J7L_011
NA
IL_6ENF_1221/a/147:153,
1/a/168:175
tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
NA
IL_6ENF_1241/a/242:247,
1/a/277:284
Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
NA
IL_6ENF_1251/a/249:252,
1/a/274:275
No text annotation
homologous
IL_4LFB_012
IL_22002.1
IL_6ENF_1261/a/292:293,
1/a/304:308
C-loop
homologous
IL_4LFB_013
IL_06671.1
IL_6ENF_1271/a/367:369,
1/a/392:393
Single bulged U
geometric
IL_5J7L_017
NA
IL_6ENF_1281/a/371:375,
1/a/389:390
C-loop
homologous
IL_5J7L_018
NA
IL_6ENF_1291/a/375:376,
1/a/387:389
Single bulged G
geometric
IL_5J7L_019
NA
IL_6ENF_1301/a/409:416,
1/a/427:433
No text annotation
homologous
IL_5J7L_020
NA
IL_6ENF_1311/a/440:442,
1/a/492:497
No text annotation
homologous
IL_5J7L_021
NA
IL_6ENF_1321/a/446:450,
1/a/483:488
tSH-tHW-tWW
homologous
IL_5J7L_022
NA
IL_6ENF_1331/a/450:455,
1/a/477:483
No text annotation
geometric
IL_5J7L_023
NA
IL_6ENF_1341/a/504:511,
1/a/540:541
SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_11411.1
IL_6ENF_1351/a/515:521,
1/a/528:536
Kink-turn related
geometric
IL_4V88_415
NA
IL_6ENF_1361/a/569:575,
1/a/880:881
No text annotation
homologous
IL_5J7L_026
NA
IL_6ENF_1371/a/580:584,
1/a/757:761
tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_6ENF_1381/a/594:596,
1/a/644:645
Major groove platform
homologous
IL_5J7L_028
NA
IL_6ENF_1391/a/597:598,
1/a/640:643
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
NA
IL_6ENF_1401/a/603:613,
1/a/628:635
No text annotation
IL_6ENF_1411/a/613:614,
1/a/626:628
Single stack bend
geometric
IL_4V9F_081
IL_15011.1
IL_6ENF_1421/a/654:655,
1/a/751:754
Major groove platform; stack outside cWW
geometric
IL_4LFB_027
IL_74641.1
IL_6ENF_1431/a/659:660,
1/a/745:747
Single stack bend
homologous
IL_5J7L_032
NA
IL_6ENF_1441/a/662:666,
1/a/740:743
Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
NA
IL_6ENF_1861/a/673:677,
1/a/713:717
Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_71154.1
IL_6ENF_1871/a/684:688,
1/a/699:706
Kink-turn
homologous
IL_5J7L_035
NA
IL_6ENF_1471/a/774:778,
1/a/804:805
Left turn
homologous
IL_5J7L_036
NA
IL_6ENF_1481/a/779:783,
1/a/799:803
tSH-tHW-tHS
homologous
IL_5J7L_037
NA
IL_6ENF_1491/a/887:894,
1/a/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
NA
IL_6ENF_1501/a/922:923,
1/a/1393:1395
Single bulged A
homologous
IL_5J7L_039
NA
IL_6ENF_1511/a/925:927,
1/a/1390:1391
Single bulged G
homologous
IL_4LFB_036
IL_28408.1
IL_6ENF_1521/a/933:935,
1/a/1380:1384
Minor groove platform
homologous
IL_5J7L_041
NA
IL_6ENF_1531/a/953:954,
1/a/1226:1228
No text annotation
homologous
IL_6CZR_150
NA
IL_6ENF_1541/a/993:997,
1/a/1044:1045
Minor groove platform
geometric
IL_5J7L_043
NA
IL_6ENF_1561/a/1048:1050,
1/a/1208:1209
Single bulged U
homologous
IL_5J7L_046
NA
IL_6ENF_1571/a/1052:1056,
1/a/1204:1206
Isolated cWS basepair
homologous
IL_4LFB_044
IL_82453.1
IL_6ENF_1581/a/1057:1058,
1/a/1199:1203
Minor groove platform
homologous
IL_5J7L_048
NA
IL_6ENF_1591/a/1060:1061,
1/a/1195:1197
Single bulged U
homologous
IL_4LFB_046
IL_97561.1
IL_6ENF_1601/a/1061:1063,
1/a/1193:1195
Isolated non-canonical cWW pair
geometric
IL_5J7L_050
NA
IL_6ENF_1611/a/1124:1128,
1/a/1144:1149
No text annotation
homologous
IL_5J7L_051
NA
IL_6ENF_1621/a/1129:1132,
1/a/1142:1143
Minor groove platform
homologous
IL_5J7L_052
NA
IL_6ENF_1631/a/1158:1161,
1/a/1175:1181
No text annotation
geometric
IL_5J7L_053
NA
IL_6ENF_1641/a/1247:1253,
1/a/1284:1290
No text annotation
homologous
IL_5J7L_054
NA
IL_6ENF_1651/a/1255:1258,
1/a/1277:1282
180 degree turn
homologous
IL_5J7L_055
NA
IL_6ENF_1661/a/1259:1263,
1/a/1272:1276
Double sheared with non-canonical cWW
homologous
IL_5J7L_056
NA
IL_6ENF_1671/a/1303:1308,
1/a/1329:1334
No text annotation
geometric
IL_4LFB_055
IL_57885.1
IL_6ENF_1681/a/1399:1401,
1/a/1501:1504
No text annotation
geometric
IL_5J7L_058
NA
IL_6ENF_1691/a/1401:1404,
1/a/1497:1501
No text annotation
geometric
IL_4V88_464
NA
IL_6ENF_1701/a/1405:1407,
1/a/1494:1496
Isolated non-canonical cWW pair
geometric
IL_4WF9_020
IL_01003.1
IL_6ENF_1711/a/1407:1409,
1/a/1491:1494
Decoding loop related
geometric
IL_3C3Z_002
IL_29925.1
IL_6ENF_1721/a/1412:1414,
1/a/1486:1488
Isolated non-canonical cWW pair
homologous
IL_5J7L_061
NA
IL_6ENF_1731/a/1416:1419,
1/a/1481:1484
Double sheared
homologous
IL_6CZR_169
NA
IL_6ENF_1741/a/1430:1435,
1/a/1466:1470
Triple sheared related
homologous
IL_5J7L_063
NA
IL_6ENF_1751/a/1440:1442,
1/a/1460:1461
Single bulged A
homologous
IL_5J7L_064
NA
IL_6ENF_1761/a/1445:1448,
1/a/1455:1457
No text annotation
homologous
IL_5J7L_065
NA

Problematic loops

#loop idProblemSequence
IL_6ENF_177Minor groove platform with extra cWW
IL_6ENF_189No text annotation
IL_6ENF_009No text annotation
IL_6ENF_029Tandem non-canonical cWW pairs
IL_6ENF_030Double sheared with non-canonical cWW
IL_6ENF_039Kink-turn
IL_6ENF_040No text annotation
IL_6ENF_049No text annotation
IL_6ENF_180No text annotation
IL_6ENF_058Triple sheared related
IL_6ENF_093Tandem non-canonical cWW pairs
IL_6ENF_184No text annotation
IL_6ENF_117No text annotation
IL_6ENF_185No text annotation
IL_6ENF_118Single bulged G
IL_6ENF_123Minor groove platform
IL_6ENF_145No text annotation
IL_6ENF_146Kink-turn
IL_6ENF_155No text annotation
IL_6ENF_193Single stack bend
IL_6ENF_188No text annotation
IL_6ENF_194No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6ENF_0011/A/30:31,
1/A/474:481,
1/A/509:510
No text annotation
homologous
J3_5J7L_036
NA
J3_6ENF_0271/A/32:35,
1/A/445:461,
1/A/468:473
No text annotation
homologous
J3_5J7L_067
NA
J3_6ENF_0021/A/56:57,
1/A/70:76,
1/A/110:114
No text annotation
homologous
J3_5J7L_037
NA
J3_6ENF_0281/A/297:301,
1/A/316:325,
1/A/337:341
No text annotation
homologous
J3_5J7L_068
NA
J3_6ENF_0031/A/683:689,
1/A/773:775,
1/A/791:794
No text annotation
homologous
J3_5J7L_038
NA
J3_6ENF_0041/A/698:700,
1/A/732:736,
1/A/760:763
No text annotation
homologous
J3_7RQB_005
NA
J3_6ENF_0051/A/1298:1303,
1/A/1625:1627,
1/A/1639:1642
No text annotation
homologous
J3_5J7L_041
NA
J3_6ENF_0061/A/1306:1309,
1/A/1605:1611,
1/A/1620:1622
No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_6ENF_0071/A/1344:1349,
1/A/1382:1385,
1/A/1402:1403
No text annotation
homologous
J3_5J7L_043
NA
J3_6ENF_0291/A/1424:1429,
1/A/1564:1565,
1/A/1568:1574
No text annotation
homologous
J3_5J7L_069
NA
J3_6ENF_0081/A/2091:2093,
1/A/2196:2200,
1/A/2223:2228
Kink-turn 3-way junction
homologous
J3_5J7L_044
NA
J3_6ENF_0301/A/2282:2284,
1/A/2384:2395,
1/A/2421:2427
No text annotation
homologous
J3_5J7L_070
NA
J3_6ENF_0091/A/2295:2299,
1/A/2317:2323,
1/A/2332:2337
No text annotation
homologous
J3_5J7L_071
NA
J3_6ENF_0101/A/2517:2520,
1/A/2545:2547,
1/A/2561:2567
No text annotation
homologous
J3_5J7L_046
NA
J3_6ENF_0111/A/2789:2791,
1/A/2805:2806,
1/A/2892:2894
No text annotation
homologous
J3_5J7L_047
NA
J3_6ENF_0121/A/2812:2815,
1/A/2831:2836,
1/A/2882:2888
No text annotation
homologous
J3_5J7L_048
NA
J3_6ENF_0131/B/10:16,
1/B/68:70,
1/B/106:110
No text annotation
homologous
J3_5J7L_049
NA
J3_6ENF_0141/a/46:47,
1/a/361:367,
1/a/393:395
No text annotation
homologous
J3_5J7L_001
NA
J3_6ENF_0321/a/46:54,
1/a/357:367,
1/a/393:395
No text annotation
J3_6ENF_0151/a/586:588,
1/a/651:654,
1/a/754:755
No text annotation
geometric
J3_5J7L_002
NA
J3_6ENF_0331/a/586:588,
1/a/651:655,
1/a/751:755
No text annotation
homologous
J3_4LFB_015
J3_17385.5
J3_6ENF_0161/a/672:673,
1/a/717:725,
1/a/732:734
No text annotation
homologous
J3_5J7L_003
NA
J3_6ENF_0171/a/826:829,
1/a/857:861,
1/a/868:874
No text annotation
homologous
J3_5J7L_004
NA
J3_6ENF_0181/a/936:939,
1/a/1344:1350,
1/a/1372:1379
No text annotation
homologous
J3_4LFB_002
J3_85722.1
J3_6ENF_0191/a/943:946,
1/a/1235:1237,
1/a/1337:1340
No text annotation
homologous
J3_4LFB_003
J3_44359.1
J3_6ENF_0201/a/955:962,
1/a/973:984,
1/a/1221:1225
No text annotation
homologous
J3_5J7L_006
NA
J3_6ENF_0211/a/990:993,
1/a/1045:1047,
1/a/1210:1215
No text annotation
homologous
J3_4LFB_005
J3_84394.1
J3_6ENF_0341/a/990:997,
1/a/1044:1047,
1/a/1210:1215
No text annotation
homologous
J3_4LFB_016
J3_28881.1
J3_6ENF_0231/a/1063:1068,
1/a/1107:1113,
1/a/1187:1193
No text annotation
homologous
J3_5J7L_008
NA
J3_6ENF_0351/a/1073:1074,
1/a/1083:1086,
1/a/1099:1102
No text annotation
homologous
J3_4LFB_017
J3_11018.1
J3_6ENF_0251/a/1116:1118,
1/a/1155:1158,
1/a/1181:1184
No text annotation
homologous
J3_5J7L_010
NA
J3_6ENF_0361/a/1116:1118,
1/a/1155:1161,
1/a/1175:1184
No text annotation
homologous
J3_5J7L_054
NA
J3_6ENF_0261/a/1237:1241,
1/a/1296:1303,
1/a/1334:1337
No text annotation
homologous
J3_4LFB_009
J3_03192.1
J4_6ENF_0011/A/268:269,
1/A/370:375,
1/A/399:406,
1/A/421:424
No text annotation
homologous
J4_5J7L_018
NA
J4_6ENF_0021/A/601:604,
1/A/624:628,
1/A/635:638,
1/A/650:656
No text annotation
homologous
J4_5J7L_020
NA
J4_6ENF_0031/A/1270:1276,
1/A/1294:1295,
1/A/1645:1648,
1/A/2009:2010
No text annotation
homologous
J4_5J7L_021
NA
J4_6ENF_0041/A/1310:1314,
1/A/1338:1343,
1/A/1404:1405,
1/A/1597:1604
No text annotation
homologous
J4_5J7L_022
NA
J4_6ENF_0051/A/1313:1314,
1/A/1338:1343,
1/A/1404:1405,
1/A/1597:1603
No text annotation
homologous
J4_5J7L_023
NA
J4_6ENF_0061/A/1444:1445,
1/A/1466:1467,
1/A/1525:1526,
1/A/1546:1547
No text annotation
homologous
J4_5J7L_024
NA
J4_6ENF_0071/A/1772:1776,
1/A/1788:1792,
1/A/1827:1830,
1/A/1975:1979
No text annotation
homologous
J4_5J7L_025
NA
J4_6ENF_0081/A/1833:1835,
1/A/1905:1906,
1/A/1924:1933,
1/A/1967:1972
No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_6ENF_0091/A/2285:2289,
1/A/2343:2347,
1/A/2370:2372,
1/A/2381:2383
No text annotation
homologous
J4_5J7L_027
NA
J4_6ENF_0101/A/2643:2646,
1/A/2674:2676,
1/A/2731:2735,
1/A/2769:2771
No text annotation
homologous
J4_5J7L_028
NA
J4_6ENF_0111/a/115:122,
1/a/239:240,
1/a/286:289,
1/a/311:312
No text annotation
homologous
J4_5J7L_001
NA
J4_6ENF_0121/a/142:144,
1/a/178:184,
1/a/193:198,
1/a/219:221
No text annotation
homologous
J4_5J7L_002
NA
J4_6ENF_0131/a/575:577,
1/a/764:769,
1/a/810:821,
1/a/879:880
No text annotation
homologous
J4_5J7L_003
NA
J4_6ENF_0141/x/7:10,
1/x/25:27,
1/x/43:49,
1/x/65:66
tRNA junction
homologous
J4_7MRL_001
NA
J5_6ENF_0011/A/47:54,
1/A/116:121,
1/A/130:131,
1/A/148:150,
1/A/176:178
No text annotation
homologous
J5_5J7L_013
NA
J5_6ENF_0021/A/531:533,
1/A/560:564,
1/A/577:579,
1/A/1261:1262,
1/A/2017:2018
No text annotation
homologous
J5_5J7L_014
NA
J5_6ENF_0031/A/584:589,
1/A/668:671,
1/A/809:812,
1/A/1195:1196,
1/A/1250:1256
No text annotation
homologous
J5_5J7L_015
NA
J5_6ENF_0041/A/1674:1682,
1/A/1706:1707,
1/A/1751:1752,
1/A/1756:1764,
1/A/1988:1990
No text annotation
homologous
J5_5J7L_016
NA
J5_6ENF_0051/A/2057:2064,
1/A/2446:2453,
1/A/2500:2507,
1/A/2582:2588,
1/A/2606:2611
No text annotation
J5_6ENF_0061/A/2074:2077,
1/A/2243:2246,
1/A/2258:2259,
1/A/2281:2282,
1/A/2427:2435
No text annotation
homologous
J5_4WF9_007
J5_39529.2
J5_6ENF_0071/a/36:39,
1/a/403:406,
1/a/436:440,
1/a/497:500,
1/a/545:548
No text annotation
homologous
J5_5J7L_001
NA
J5_6ENF_0081/a/58:61,
1/a/106:113,
1/a/314:316,
1/a/337:339,
1/a/350:354
No text annotation
homologous
J5_4LFB_002
J5_58574.1
J6_6ENF_0011/A/45:46,
1/A/179:183,
1/A/214:224,
1/A/231:235,
1/A/262:266,
1/A/426:433
No text annotation
J6_6ENF_0021/A/2074:2077,
1/A/2243:2246,
1/A/2258:2259,
1/A/2281:2284,
1/A/2384:2395,
1/A/2421:2435
No text annotation
J7_6ENF_0011/A/8:15,
1/A/525:531,
1/A/2018:2023,
1/A/2040:2043,
1/A/2625:2630,
1/A/2788:2789,
1/A/2894:2895
No text annotation
J7_6ENF_0021/A/817:822,
1/A/835:838,
1/A/940:946,
1/A/971:976,
1/A/987:991,
1/A/1163:1164,
1/A/1185:1190
No text annotation

Problematic loops

#loop idProblemSequence
J3_6ENF_031No text annotation
J3_6ENF_022No text annotation
J3_6ENF_024No text annotation

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