HL_6ENJ_028

3D structure

PDB id

6ENJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

6ENJ|1|A|U|958, 6ENJ|1|A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ENJ_028 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2756

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6ENJ|1|A|G|954
6ENJ|1|A|U|955
6ENJ|1|A|G|956
6ENJ|1|A|C|957
6ENJ|1|A|U|958
6ENJ|1|A|A|959
6ENJ|1|A|A|960
6ENJ|1|A|C|961
6ENJ|1|A|G|962
6ENJ|1|A|U|963

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16