HL_6ENJ_081

3D structure

PDB id

6ENJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ENJ_081 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1256

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6ENJ|1|a|A|320
6ENJ|1|a|A|321
6ENJ|1|a|C|322
6ENJ|1|a|U|323
6ENJ|1|a|G|324
6ENJ|1|a|A|325
6ENJ|1|a|G|326
6ENJ|1|a|A|327
6ENJ|1|a|C|328
6ENJ|1|a|A|329
6ENJ|1|a|C|330
6ENJ|1|a|G|331
6ENJ|1|a|G|332
6ENJ|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20