HL_6ERI_003

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCAAC

Length

6 nucleotides

Bulged bases

6ERI|1|AA|C|123, 6ERI|1|AA|A|124, 6ERI|1|AA|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_003 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.1088

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

6ERI|1|AA|G|121
6ERI|1|AA|U|122
6ERI|1|AA|C|123
6ERI|1|AA|A|124
6ERI|1|AA|A|125
6ERI|1|AA|C|126

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AT

50S ribosomal protein L23, chloroplastic

Chain Ac

50S ribosomal protein L34, chloroplastic