RNA 3D Hub //

6ERI Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6ERI_0011/AA/58:67No text annotation
homologous
HL_7RQB_001
NA
HL_6ERI_0021/AA/86:94Pseudoknot geometry
homologous
HL_4WF9_002
HL_00911.2
HL_6ERI_0031/AA/121:126No text annotation
homologous
HL_4WF9_003
HL_75660.8
HL_6ERI_0041/AA/129:132Mini UNCG
geometric
HL_4V88_192
NA
HL_6ERI_0051/AA/142:152No text annotation
homologous
HL_5J7L_138
NA
HL_6ERI_0061/AA/179:186No text annotation
geometric
HL_5J7L_139
NA
HL_6ERI_0071/AA/210:215No text annotation
homologous
HL_5J7L_140
NA
HL_6ERI_0081/AA/231:237No text annotation
homologous
HL_5J7L_141
NA
HL_6ERI_0091/AA/261:266GNRA
geometric
HL_1RLG_002
HL_34789.4
HL_6ERI_0101/AA/315:321Mini UNCG
geometric
HL_5T16_002
HL_12626.2
HL_6ERI_0111/AA/328:332No text annotation
homologous
HL_7A0S_011
HL_75660.8
HL_6ERI_0121/AA/336:344T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_6ERI_0131/AA/393:405No text annotation
homologous
HL_4WF9_013
HL_69139.1
HL_6ERI_0141/AA/422:429Pseudoknot geometry
homologous
HL_5J7L_146
NA
HL_6ERI_0151/AA/474:479GNRA
homologous
HL_7RQB_015
NA
HL_6ERI_0161/AA/499:504GNRA
homologous
HL_7RQB_016
NA
HL_6ERI_0171/AA/553:561No text annotation
HL_6ERI_0181/AA/576:585No text annotation
homologous
HL_7RQB_018
NA
HL_6ERI_0191/AA/621:629No text annotation
HL_6ERI_0201/AA/641:646GNRA
homologous
HL_5J7L_152
NA
HL_6ERI_0211/AA/653:659GNRA
homologous
HL_9DFE_019
HL_34789.4
HL_6ERI_0221/AA/723:730No text annotation
homologous
HL_7RQB_022
NA
HL_6ERI_0231/AA/755:764No text annotation
homologous
HL_4WF9_023
HL_50204.1
HL_6ERI_0241/AA/790:796No text annotation
geometric
HL_5U3G_001
HL_75660.8
HL_6ERI_0251/AA/837:842No text annotation
homologous
HL_4WF9_025
HL_27530.1
HL_6ERI_0271/AA/942:954No text annotation
HL_6ERI_0281/AA/983:990GNRA
homologous
HL_7RQB_027
NA
HL_6ERI_0291/AA/1006:1013No text annotation
homologous
HL_5J7L_160
NA
HL_6ERI_0321/AA/1195:1202No text annotation
geometric
HL_6UFG_001
HL_17440.1
HL_6ERI_0331/AA/1243:1248GNRA
homologous
HL_7RQB_032
NA
HL_6ERI_0341/AA/1302:1310No text annotation
homologous
HL_7RQB_033
NA
HL_6ERI_0351/AA/1345:1351No text annotation
homologous
HL_7RQB_034
NA
HL_6ERI_0361/AA/1384:1389GNRA
homologous
HL_4WF9_034
HL_34789.4
HL_6ERI_0371/AA/1410:1419No text annotation
homologous
HL_4WF9_035
HL_77449.1
HL_6ERI_0381/AA/1470:1481No text annotation
HL_6ERI_0391/AA/1529:1537No text annotation
HL_6ERI_0411/AA/1599:1602Mini UNCG
homologous
HL_7A0S_039
HL_90436.3
HL_6ERI_0421/AA/1648:1655No text annotation
homologous
HL_7RQB_040
NA
HL_6ERI_0431/AA/1666:1672GNRA
homologous
HL_5J7L_174
NA
HL_6ERI_0441/AA/1727:1732UNCG
geometric
HL_4V9F_044
HL_61337.4
HL_6ERI_0451/AA/1748:1756No text annotation
HL_6ERI_0461/AA/1762:1766No text annotation
homologous
HL_7RQB_044
NA
HL_6ERI_0471/AA/1787:1797No text annotation
homologous
HL_4WF9_043
HL_87681.1
HL_6ERI_0481/AA/1816:1821GNRA
homologous
HL_7RQB_046
NA
HL_6ERI_0501/AA/1924:1934No text annotation
geometric
HL_5TBW_049
NA
HL_6ERI_0511/AA/1963:1971No text annotation
homologous
HL_5J7L_182
NA
HL_6ERI_0521/AA/2041:2050No text annotation
homologous
HL_7RQB_050
NA
HL_6ERI_0541/AA/2222:2233No text annotation
HL_6ERI_0551/AA/2265:2273No text annotation
homologous
HL_4WF9_049
HL_11974.2
HL_6ERI_0561/AA/2281:2293No text annotation
homologous
HL_7RQB_054
NA
HL_6ERI_1081/AA/2321:2329No text annotation
homologous
HL_9DFE_198
HL_02452.1
HL_6ERI_0581/AA/2341:2348Pseudoknot geometry
homologous
HL_7RQB_056
NA
HL_6ERI_0591/AA/2372:2379GNRA with extra cWW
homologous
HL_4WF9_053
HL_87268.2
HL_6ERI_0601/AA/2391:2396GNRA
homologous
HL_4WF9_054
HL_34789.4
HL_6ERI_0611/AA/2421:2430No text annotation
homologous
HL_7RQB_059
NA
HL_6ERI_0621/AA/2488:2496No text annotation
homologous
HL_4WF9_056
HL_52011.1
HL_6ERI_0631/AA/2544:2553No text annotation
geometric
HL_4V9F_019
HL_42293.1
HL_6ERI_0641/AA/2568:2574No text annotation
homologous
HL_7A0S_061
HL_48677.1
HL_6ERI_0651/AA/2611:2616GNRA
homologous
HL_7RQB_063
NA
HL_6ERI_0661/AA/2675:2680GNRA
homologous
HL_7RQB_064
NA
HL_6ERI_0671/AA/2718:2723Ribsomal LSU H95
homologous
HL_5J7L_198
NA
HL_6ERI_0681/AA/2763:2777No text annotation
homologous
HL_7RQB_066
NA
HL_6ERI_0691/AB/15:23No text annotation
geometric
HL_5J7L_201
NA
HL_6ERI_0701/AB/60:65GNRA
geometric
HL_4LFB_028
HL_34789.4
HL_6ERI_1061/Ax/35:48No text annotation
HL_6ERI_0711/Ax/38:44No text annotation
geometric
HL_7RQB_070
NA
HL_6ERI_0721/Ax/86:91GNRA
homologous
HL_7A0S_070
HL_34789.4
HL_6ERI_0731/BA/14:24No text annotation
homologous
HL_4LFB_001
HL_73535.1
HL_6ERI_0741/BA/74:82No text annotation
geometric
HL_4V9F_019
HL_42293.1
HL_6ERI_0751/BA/143:148GNRA
homologous
HL_5J7L_003
NA
HL_6ERI_0761/BA/170:175GNRA
homologous
HL_5J7L_004
NA
HL_6ERI_1071/BA/184:189No text annotation
geometric
HL_8C3A_054
NA
HL_6ERI_0781/BA/231:239GNRA related
homologous
HL_5J7L_006
NA
HL_6ERI_0791/BA/268:273GNRA
homologous
HL_5J7L_007
NA
HL_6ERI_0801/BA/292:305No text annotation
homologous
HL_6CZR_079
NA
HL_6ERI_0811/BA/314:319UNCG
homologous
HL_4LFB_009
HL_61337.4
HL_6ERI_0821/BA/351:356GNRA
homologous
HL_4LFB_010
HL_34789.4
HL_6ERI_0831/BA/391:396UNCG
homologous
HL_4LFB_011
HL_61337.4
HL_6ERI_0841/BA/422:432No text annotation
HL_6ERI_0851/BA/471:476No text annotation
geometric
HL_4WF9_003
HL_75660.8
HL_6ERI_0861/BA/566:572GNRA-like with tWH
homologous
HL_5J7L_014
NA
HL_6ERI_0871/BA/638:647No text annotation
homologous
HL_4LFB_015
HL_38491.2
HL_6ERI_0881/BA/675:680GNRA
homologous
HL_5J7L_016
NA
HL_6ERI_0891/BA/735:745No text annotation
homologous
HL_5J7L_017
NA
HL_6ERI_0911/BA/812:817GNRA
homologous
HL_4LFB_019
HL_34789.4
HL_6ERI_0921/BA/847:852GNRA
homologous
HL_6CZR_091
NA
HL_6ERI_0931/BA/913:922No text annotation
homologous
HL_5J7L_021
NA
HL_6ERI_0941/BA/962:967GNRA
homologous
HL_4LFB_022
HL_34789.4
HL_6ERI_0961/BA/1026:1031GNRA
homologous
HL_5J7L_023
NA
HL_6ERI_0971/BA/1039:1046T-loop related
homologous
HL_4LFB_025
HL_63894.2
HL_6ERI_0991/BA/1114:1120GNRA
homologous
HL_5J7L_026
NA
HL_6ERI_1001/BA/1214:1219GNRA
homologous
HL_5J7L_027
NA
HL_6ERI_1011/BA/1263:1272T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_93658.1
HL_6ERI_1021/BA/1305:1316No text annotation
homologous
HL_4LFB_030
HL_86432.1
HL_6ERI_1031/BA/1399:1404UNCG
homologous
HL_5J7L_030
NA
HL_6ERI_1041/BA/1465:1470GNRA
homologous
HL_6CZR_103
NA

Problematic loops

#loop idProblemSequence
HL_6ERI_026No text annotation
HL_6ERI_030No text annotation
HL_6ERI_105No text annotation
HL_6ERI_031No text annotation
HL_6ERI_040No text annotation
HL_6ERI_049No text annotation
HL_6ERI_053No text annotation
HL_6ERI_057No text annotation
HL_6ERI_077No text annotation
HL_6ERI_090No text annotation
HL_6ERI_095UNCG variation
HL_6ERI_098No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6ERI_0011/AA/35:36,
1/AA/454:456		Single bulged A
homologous
IL_7A0S_002
IL_14190.2
IL_6ERI_0021/AA/42:43,
1/AA/446:448		Minor groove platform
homologous
IL_5J7L_247
NA
IL_6ERI_0031/AA/80:84,
1/AA/96:103		Kink-turn
homologous
IL_7RQB_004
NA
IL_6ERI_0041/AA/136:138,
1/AA/156:160		No text annotation
geometric
IL_6DME_003
IL_75527.2
IL_6ERI_0051/AA/168:169,
1/AA/197:199		Single stack bend
homologous
IL_5J7L_249
NA
IL_6ERI_0061/AA/173:179,
1/AA/186:193		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_006
IL_62167.3
IL_6ERI_0071/AA/223:230,
1/AA/238:244		8x7 Sarcin-Ricin; G-bulge
homologous
IL_4WF9_009
IL_62167.3
IL_6ERI_0081/AA/278:280,
1/AA/375:379		Isolated non-canonical cWW with bulges
geometric
IL_7ELQ_002
NA
IL_6ERI_0111/AA/298:300,
1/AA/359:361		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_6ERI_0121/AA/303:305,
1/AA/352:356		No text annotation
homologous
IL_7RQB_013
NA
IL_6ERI_0131/AA/312:314,
1/AA/322:324		Isolated non-canonical cWW pair
geometric
IL_5TBW_068
NA
IL_6ERI_0141/AA/493:496,
1/AA/507:520		No text annotation
homologous
IL_7A0S_009
IL_44923.1
IL_6ERI_0151/AA/547:550,
1/AA/564:567		Double sheared
homologous
IL_5J7L_256
NA
IL_6ERI_0161/AA/574:576,
1/AA/585:587		Isolated non-canonical cWW pair
geometric
IL_5J7L_257
NA
IL_6ERI_0171/AA/616:620,
1/AA/630:634		AAA cross-strand stack
homologous
IL_5J7L_258
NA
IL_6ERI_0181/AA/683:685,
1/AA/817:819		No text annotation
homologous
IL_7RQB_017
NA
IL_6ERI_0191/AA/685:689,
1/AA/810:817		tHW-tHW cross-strand stack
geometric
IL_7RQB_018
NA
IL_6ERI_0201/AA/700:702,
1/AA/782:784		Isolated non-canonical cWW pair
geometric
IL_5MWI_007
NA
IL_6ERI_0211/AA/708:709,
1/AA/774:776		Single bulged A
geometric
IL_7RQB_019
NA
IL_6ERI_0221/AA/713:714,
1/AA/739:741		Single bulged G
geometric
IL_4V9F_026
IL_28408.2
IL_6ERI_0231/AA/714:718,
1/AA/735:739		Triple sheared
homologous
IL_7RQB_021
NA
IL_6ERI_0241/AA/749:751,
1/AA/768:769		Major groove platform
homologous
IL_5J7L_264
NA
IL_6ERI_0251/AA/786:788,
1/AA/798:802		Multiple bulged bases
geometric
IL_5J7L_265
NA
IL_6ERI_0261/AA/848:850,
1/AA/967:970		No text annotation
geometric
IL_8GLP_064
IL_16315.2
IL_6ERI_0271/AA/866:872,
1/AA/924:930		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
NA
IL_6ERI_1751/AA/866:873,
1/AA/922:930		No text annotation
IL_6ERI_0281/AA/872:873,
1/AA/922:924		Minor groove platform
geometric
IL_7RQB_028
NA
IL_6ERI_0291/AA/874:878,
1/AA/918:921		C-loop
homologous
IL_4WF9_033
IL_16301.1
IL_6ERI_0301/AA/886:891,
1/AA/906:910		No text annotation
IL_6ERI_0311/AA/1022:1024,
1/AA/1186:1187		Single bulged C
homologous
IL_7RQB_035
NA
IL_6ERI_0321/AA/1026:1030,
1/AA/1180:1184		UAA/GAN
homologous
IL_4WF9_036
IL_08938.1
IL_6ERI_1761/AA/1032:1039,
1/AA/1177:1178		SSU/LSU pseudoknot
homologous
IL_5J7L_278
NA
IL_6ERI_1771/AA/1039:1041,
1/AA/1176:1177		Single bulged U
homologous
IL_7A0S_035
IL_97561.5
IL_6ERI_0341/AA/1046:1052,
1/AA/1167:1171		No text annotation
homologous
IL_7RQB_039
NA
IL_6ERI_0351/AA/1052:1058,
1/AA/1152:1167		No text annotation
homologous
IL_7A0S_037
IL_50715.4
IL_6ERI_0361/AA/1059:1062,
1/AA/1149:1151		Isolated non-canonical cWW pair
homologous
IL_7RQB_041
NA
IL_6ERI_0371/AA/1071:1079,
1/AA/1136:1140		Kink-turn
homologous
IL_7RQB_042
NA
IL_6ERI_0411/AA/1217:1219,
1/AA/1268:1271		Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.5
IL_6ERI_0421/AA/1224:1229,
1/AA/1259:1263		No text annotation
IL_6ERI_0431/AA/1229:1236,
1/AA/1255:1259		Kink-turn
geometric
IL_3U4M_004
IL_90775.2
IL_6ERI_0441/AA/1236:1237,
1/AA/1253:1255		Single bulged U
geometric
IL_2R8S_004
IL_97561.5
IL_6ERI_0451/AA/1240:1242,
1/AA/1249:1250		Single bulged A
homologous
IL_7RQB_048
NA
IL_6ERI_0461/AA/1283:1290,
1/AA/2025:2031		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_6ERI_0471/AA/1331:1334,
1/AA/1639:1640		Major groove platform; stack outside cWW
homologous
IL_4WF9_049
IL_74641.2
IL_6ERI_0481/AA/1340:1344,
1/AA/1352:1354		C-loop
homologous
IL_7RQB_051
NA
IL_6ERI_0491/AA/1372:1376,
1/AA/1397:1401		UAA/GAN
homologous
IL_7A0S_048
IL_89021.4
IL_6ERI_0501/AA/1378:1382,
1/AA/1391:1395		tSH-tHW-tHS
homologous
IL_5J7L_293
NA
IL_6ERI_1841/AA/1430:1432,
1/AA/1626:1629		No text annotation
geometric
IL_4N0T_004
IL_32983.2
IL_6ERI_0521/AA/1435:1437,
1/AA/1618:1623		No text annotation
IL_6ERI_0531/AA/1440:1442,
1/AA/1611:1615		No text annotation
IL_6ERI_0541/AA/1453:1456,
1/AA/1591:1595		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
NA
IL_6ERI_0551/AA/1458:1461,
1/AA/1585:1589		tSH-tHW
homologous
IL_7RQB_057
NA
IL_6ERI_0561/AA/1486:1487,
1/AA/1557:1559		No text annotation
IL_6ERI_0571/AA/1487:1490,
1/AA/1554:1557		No text annotation
homologous
IL_5J7L_299
NA
IL_6ERI_0581/AA/1493:1498,
1/AA/1547:1551		No text annotation
IL_6ERI_0601/AA/1560:1563,
1/AA/1576:1580		UAA/GAN variation
homologous
IL_5J7L_303
NA
IL_6ERI_0611/AA/1687:1692,
1/AA/2018:2020		No text annotation
homologous
IL_5J7L_304
NA
IL_6ERI_0621/AA/1699:1701,
1/AA/2009:2011		Isolated tWW turn
homologous
IL_7RQB_065
NA
IL_6ERI_0631/AA/1702:1705,
1/AA/2007:2008		Major groove platform; stack outside cWW
homologous
IL_4WF9_064
IL_74641.2
IL_6ERI_1791/AA/1702:1710,
1/AA/2004:2008		No text annotation
homologous
IL_4WF9_117
IL_80252.1
IL_6ERI_0641/AA/1705:1710,
1/AA/2004:2007		Intercalated tWH
geometric
IL_4WF9_065
IL_28217.1
IL_6ERI_0651/AA/1722:1727,
1/AA/1732:1738		tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA
IL_6ERI_0661/AA/1780:1781,
1/AA/1994:1996		Single bulged A
homologous
IL_4WF9_068
IL_14190.2
IL_6ERI_0671/AA/1808:1814,
1/AA/1823:1831		Kink-turn related
homologous
IL_7RQB_070
NA
IL_6ERI_0681/AA/1847:1850,
1/AA/1916:1917		Minor groove platform, major groove intercalation
homologous
IL_7RQB_071
NA
IL_6ERI_0691/AA/1851:1852,
1/AA/1912:1915		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_6ERI_0701/AA/1856:1859,
1/AA/1907:1908		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
NA
IL_6ERI_0711/AA/1861:1865,
1/AA/1901:1905		UAA/GAN with extra stack
homologous
IL_7RQB_074
NA
IL_6ERI_0721/AA/1866:1869,
1/AA/1897:1900		Double sheared
geometric
IL_4KZD_002
IL_58355.2
IL_6ERI_0731/AA/1874:1877,
1/AA/1888:1892		UAA/GAN related
homologous
IL_5J7L_317
NA
IL_6ERI_0741/AA/1947:1948,
1/AA/1978:1981		Bulged stacked bases
homologous
IL_7RQB_076
NA
IL_6ERI_0751/AA/1948:1959,
1/AA/1975:1978		No text annotation
geometric
IL_4WF9_077
IL_84014.1
IL_6ERI_0761/AA/2064:2066,
1/AA/2634:2635		Major groove platform
homologous
IL_7RQB_078
NA
IL_6ERI_0771/AA/2068:2071,
1/AA/2628:2632		No text annotation
IL_6ERI_0781/AA/2081:2083,
1/AA/2459:2460		Single bulged U
homologous
IL_7RQB_080
NA
IL_6ERI_0791/AA/2084:2085,
1/AA/2455:2458		Minor groove platform
homologous
IL_7RQB_081
NA
IL_6ERI_0801/AA/2095:2098,
1/AA/2252:2256		tSH-tHW
geometric
IL_7RQB_011
NA
IL_6ERI_0811/AA/2108:2110,
1/AA/2207:2209		Isolated non-canonical cWW pair
geometric
IL_4WF9_083
IL_01003.4
IL_6ERI_0821/AA/2218:2220,
1/AA/2235:2236		Single bulged U
homologous
IL_5J7L_331
NA
IL_6ERI_0831/AA/2314:2315,
1/AA/2335:2338		Major groove platform; stack outside cWW
geometric
IL_7A0S_046
IL_74641.2
IL_6ERI_0841/AA/2367:2370,
1/AA/2381:2384		Double sheared
homologous
IL_7RQB_089
NA
IL_6ERI_0851/AA/2418:2420,
1/AA/2431:2432		Single bulged U
homologous
IL_5J7L_334
NA
IL_6ERI_0861/AA/2470:2471,
1/AA/2515:2517		Single stack bend
geometric
IL_4WF9_089
IL_15011.3
IL_6ERI_0871/AA/2471:2472,
1/AA/2513:2515		Major groove platform
homologous
IL_4WF9_090
IL_48076.8
IL_6ERI_0881/AA/2474:2476,
1/AA/2510:2511		Major groove platform
geometric
IL_7A0S_085
IL_48076.8
IL_6ERI_0891/AA/2476:2478,
1/AA/2506:2510		Major groove minor groove platform with extra cWW
homologous
IL_7RQB_094
NA
IL_6ERI_0901/AA/2483:2487,
1/AA/2497:2501		Double sheared with non-canonical cWW
homologous
IL_5J7L_338
NA
IL_6ERI_0911/AA/2524:2525,
1/AA/2597:2599		Major groove platform
homologous
IL_4WF9_094
IL_46637.2
IL_6ERI_0921/AA/2527:2529,
1/AA/2591:2595		Isolated non-canonical cWW with bulges
homologous
IL_7RQB_097
NA
IL_6ERI_0931/AA/2529:2531,
1/AA/2587:2591		Single stack bend
geometric
IL_3MOJ_004
IL_15011.3
IL_6ERI_0941/AA/2539:2540,
1/AA/2557:2560		Major groove platform with intercalation
homologous
IL_7RQB_099
NA
IL_6ERI_0951/AA/2608:2609,
1/AA/2618:2620		Single bulged A
homologous
IL_5J7L_344
NA
IL_6ERI_0961/AA/2653:2657,
1/AA/2792:2800		tSH-tHS-tHW
homologous
IL_4WF9_099
IL_04638.4
IL_6ERI_0971/AA/2657:2659,
1/AA/2790:2792		Isolated non-canonical cWW pair
geometric
IL_4LFB_061
NA
IL_6ERI_0981/AA/2669:2675,
1/AA/2680:2685		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7A0S_094
IL_16458.6
IL_6ERI_0991/AA/2697:2701,
1/AA/2743:2745		C-loop
homologous
IL_4WF9_101
IL_63596.12
IL_6ERI_1001/AA/2704:2708,
1/AA/2736:2740		UAA/GAN variation
geometric
IL_4V9F_094
IL_45790.2
IL_6ERI_1011/AA/2712:2713,
1/AA/2728:2732		Multiple bulged bases
homologous
IL_5J7L_349
NA
IL_6ERI_1021/AA/2752:2754,
1/AA/2786:2787		Single bulged C
geometric
IL_1DQF_001
NA
IL_6ERI_1031/AA/2755:2760,
1/AA/2780:2785		UAA/GAN with extra cWW
homologous
IL_7RQB_107
NA
IL_6ERI_1041/AB/42:43,
1/AB/82:84		Single bulged C
geometric
IL_7RQB_108
NA
IL_6ERI_1051/AB/47:49,
1/AB/75:78		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_87316.2
IL_6ERI_1061/AB/51:56,
1/AB/69:73		No text annotation
geometric
IL_5TBW_133
NA
IL_6ERI_1071/Ax/17:18,
1/Ax/65:67		Major groove intercalation
homologous
IL_4WF9_112
IL_14190.2
IL_6ERI_1081/Ax/23:29,
1/Ax/55:60		No text annotation
geometric
IL_9E6Q_106
IL_41504.1
IL_6ERI_1091/Ax/30:31,
1/Ax/52:54		Major groove platform
geometric
IL_7RQB_078
NA
IL_6ERI_1101/Ax/35:38,
1/Ax/44:48		No text annotation
IL_6ERI_1111/Ax/71:79,
1/Ax/98:106		Bacterial 5S Loop E
homologous
IL_7RQB_115
NA
IL_6ERI_1121/BA/32:34,
1/BA/501:502		Single bulged G
homologous
IL_4LFB_001
IL_28408.2
IL_6ERI_1131/BA/46:47,
1/BA/368:370		Single bulged A
homologous
IL_5J7L_002
NA
IL_6ERI_1141/BA/49:54,
1/BA/331:333		No text annotation
homologous
IL_5J7L_003
NA
IL_6ERI_1151/BA/56:58,
1/BA/328:329		Minor groove platform
homologous
IL_4LFB_004
IL_34520.3
IL_6ERI_1161/BA/65:68,
1/BA/88:89		Multiple bulged bases
homologous
IL_6CZR_117
NA
IL_6ERI_1171/BA/69:71,
1/BA/85:87		Isolated non-canonical cWW pair
homologous
IL_6CZR_118
NA
IL_6ERI_1181/BA/110:112,
1/BA/206:208		No text annotation
geometric
IL_7RQB_034
NA
IL_6ERI_1191/BA/113:116,
1/BA/203:205		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
NA
IL_6ERI_1201/BA/118:121,
1/BA/199:201		No text annotation
geometric
IL_8C3A_432
NA
IL_6ERI_1211/BA/132:138,
1/BA/153:160		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
NA
IL_6ERI_1221/BA/214:219,
1/BA/249:256		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
NA
IL_6ERI_1851/BA/221:224,
1/BA/246:247		No text annotation
homologous
IL_4LFB_012
IL_22002.1
IL_6ERI_1241/BA/264:265,
1/BA/276:280		C-loop
homologous
IL_5J7L_016
NA
IL_6ERI_1251/BA/339:341,
1/BA/364:365		Single bulged U
homologous
IL_5J7L_017
NA
IL_6ERI_1261/BA/343:347,
1/BA/361:362		C-loop
homologous
IL_5J7L_018
NA
IL_6ERI_1271/BA/347:348,
1/BA/359:361		Single bulged G
geometric
IL_5J7L_019
NA
IL_6ERI_1281/BA/381:388,
1/BA/399:405		No text annotation
IL_6ERI_1291/BA/418:422,
1/BA/432:437		6x5 Sarcin-Ricin; G-bulge
homologous
IL_4LFB_018
IL_82100.1
IL_6ERI_1301/BA/453:460,
1/BA/489:490		SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_11411.1
IL_6ERI_1311/BA/464:470,
1/BA/477:485		Kink-turn related
geometric
IL_4V88_415
NA
IL_6ERI_1321/BA/518:524,
1/BA/830:831		No text annotation
homologous
IL_6CZR_134
NA
IL_6ERI_1811/BA/529:533,
1/BA/706:710		tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_6ERI_1341/BA/540:543,
1/BA/594:597		Tandem non-canonical cWW pairs
geometric
IL_5TBW_128
NA
IL_6ERI_1351/BA/543:545,
1/BA/593:594		Major groove platform
homologous
IL_4LFB_024
IL_48076.8
IL_6ERI_1361/BA/546:548,
1/BA/588:592		No text annotation
homologous
IL_6CZR_361
NA
IL_6ERI_1371/BA/555:561,
1/BA/577:581		No text annotation
IL_6ERI_1381/BA/605:608,
1/BA/695:699		Tandem non-canonical cWW pairs
geometric
IL_4V88_429
NA
IL_6ERI_1391/BA/611:615,
1/BA/689:692		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
NA
IL_6ERI_1401/BA/619:621,
1/BA/683:685		No text annotation
geometric
IL_353D_001
NA
IL_6ERI_1411/BA/622:626,
1/BA/662:666		Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_71154.3
IL_6ERI_1421/BA/633:637,
1/BA/648:655		Kink-turn
homologous
IL_5J7L_035
NA
IL_6ERI_1431/BA/723:727,
1/BA/753:754		Left turn
geometric
IL_5J7L_036
NA
IL_6ERI_1441/BA/727:733,
1/BA/747:753		No text annotation
IL_6ERI_1451/BA/837:844,
1/BA/855:860		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_84044.1
IL_6ERI_1461/BA/872:873,
1/BA/1343:1345		Single bulged A
homologous
IL_6CZR_147
NA
IL_6ERI_1471/BA/875:877,
1/BA/1340:1341		Single bulged G
homologous
IL_4LFB_036
IL_28408.2
IL_6ERI_1481/BA/883:885,
1/BA/1330:1334		Minor groove platform
homologous
IL_5J7L_041
NA
IL_6ERI_1491/BA/903:904,
1/BA/1175:1177		Minor groove platform
homologous
IL_4LFB_038
IL_34520.3
IL_6ERI_1501/BA/943:947,
1/BA/994:995		Minor groove platform
homologous
IL_4LFB_039
IL_61370.1
IL_6ERI_1511/BA/948:949,
1/BA/991:993		Single stack bend
homologous
IL_5J7L_044
NA
IL_6ERI_1521/BA/998:1000,
1/BA/1157:1158		Single bulged U
homologous
IL_5J7L_046
NA
IL_6ERI_1531/BA/1002:1006,
1/BA/1153:1155		Isolated cWS basepair
homologous
IL_4LFB_044
IL_82453.1
IL_6ERI_1541/BA/1007:1008,
1/BA/1148:1152		Minor groove platform
homologous
IL_5J7L_048
NA
IL_6ERI_1551/BA/1010:1011,
1/BA/1144:1146		Single bulged A
homologous
IL_5J7L_049
NA
IL_6ERI_1561/BA/1011:1013,
1/BA/1142:1144		Isolated non-canonical cWW pair
geometric
IL_5J7L_050
NA
IL_6ERI_1571/BA/1074:1078,
1/BA/1093:1098		No text annotation
homologous
IL_5J7L_051
NA
IL_6ERI_1581/BA/1107:1111,
1/BA/1123:1130		No text annotation
IL_6ERI_1591/BA/1191:1193,
1/BA/1242:1244		Isolated non-canonical cWW pair
geometric
IL_7A0S_014
IL_01003.4
IL_6ERI_1601/BA/1196:1202,
1/BA/1233:1239		No text annotation
homologous
IL_5J7L_054
NA
IL_6ERI_1611/BA/1204:1207,
1/BA/1226:1231		180 degree turn
homologous
IL_4LFB_052
IL_08849.1
IL_6ERI_1621/BA/1208:1212,
1/BA/1221:1225		Double sheared with non-canonical cWW
homologous
IL_5J7L_056
NA
IL_6ERI_1631/BA/1252:1257,
1/BA/1278:1283		No text annotation
homologous
IL_5J7L_057
NA
IL_6ERI_1641/BA/1349:1351,
1/BA/1451:1454		No text annotation
homologous
IL_5J7L_058
NA
IL_6ERI_1651/BA/1351:1354,
1/BA/1447:1451		No text annotation
geometric
IL_4V88_464
NA
IL_6ERI_1661/BA/1355:1357,
1/BA/1444:1446		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_6ERI_1671/BA/1357:1359,
1/BA/1441:1444		Not an internal loop
geometric
IL_5VCI_005
NA
IL_6ERI_1681/BA/1362:1364,
1/BA/1436:1438		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
NA
IL_6ERI_1691/BA/1366:1369,
1/BA/1431:1434		Double sheared
homologous
IL_5J7L_062
NA
IL_6ERI_1701/BA/1375:1377,
1/BA/1423:1425		Isolated non-canonical cWW pair
homologous
IL_4LFB_061
NA
IL_6ERI_1711/BA/1380:1385,
1/BA/1416:1420		Triple sheared related
geometric
IL_5J7L_063
NA
IL_6ERI_1721/BA/1385:1387,
1/BA/1414:1416		Isolated non-canonical cWW pair
homologous
IL_4LFB_063
IL_01003.4
IL_6ERI_1731/BA/1390:1392,
1/BA/1410:1411		Single bulged A
homologous
IL_5J7L_064
NA
IL_6ERI_1741/BA/1395:1398,
1/BA/1405:1407		No text annotation
homologous
IL_5J7L_065
NA

Problematic loops

#loop idProblemSequence
IL_6ERI_009No text annotation
IL_6ERI_010No text annotation
IL_6ERI_183No text annotation
IL_6ERI_033Isolated non-canonical cWW pair
IL_6ERI_038Isolated non-canonical cWW pair
IL_6ERI_039No text annotation
IL_6ERI_040No text annotation
IL_6ERI_051No text annotation
IL_6ERI_178No text annotation
IL_6ERI_059No text annotation
IL_6ERI_180No text annotation
IL_6ERI_123No text annotation
IL_6ERI_133tSH-tHW-tHS-cWW
IL_6ERI_182Isolated cWH basepair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6ERI_0291/AA/23:30,
1/AA/486:493,
1/AA/520:527		No text annotation
J3_6ERI_0301/AA/23:30,
1/AA/486:496,
1/AA/507:527		No text annotation
J3_6ERI_0311/AA/31:34,
1/AA/457:473,
1/AA/480:485		No text annotation
homologous
J3_9DFE_003
J3_07616.1
J3_6ERI_0011/AA/55:56,
1/AA/69:75,
1/AA/108:112		No text annotation
homologous
J3_5J7L_037
NA
J3_6ERI_0021/AA/254:258,
1/AA/269:276,
1/AA/381:382		No text annotation
homologous
J3_7RQB_003
NA
J3_6ERI_0321/AA/307:311,
1/AA/325:334,
1/AA/346:350		No text annotation
homologous
J3_4WF9_015
J3_77124.1
J3_6ERI_0031/AA/694:700,
1/AA/784:786,
1/AA/802:805		No text annotation
homologous
J3_5J7L_038
NA
J3_6ERI_0041/AA/709:711,
1/AA/743:747,
1/AA/771:774		No text annotation
homologous
J3_7RQB_005
NA
J3_6ERI_0051/AA/856:861,
1/AA/935:938,
1/AA/958:961		No text annotation
J3_6ERI_0071/AA/1319:1324,
1/AA/1661:1663,
1/AA/1675:1678		No text annotation
homologous
J3_5J7L_041
NA
J3_6ERI_0081/AA/1326:1330,
1/AA/1641:1647,
1/AA/1656:1659		No text annotation
homologous
J3_4WF9_005
J3_68164.1
J3_6ERI_0091/AA/1365:1371,
1/AA/1402:1406,
1/AA/1423:1424		No text annotation
homologous
J3_7RQB_009
NA
J3_6ERI_0331/AA/1445:1450,
1/AA/1598:1599,
1/AA/1602:1608		No text annotation
homologous
J3_7A0S_019
J3_34864.3
J3_6ERI_0101/AA/2104:2107,
1/AA/2210:2214,
1/AA/2240:2246		No text annotation
geometric
J3_4V9F_007
J3_86017.1
J3_6ERI_0341/AA/2299:2301,
1/AA/2401:2412,
1/AA/2438:2444		No text annotation
homologous
J3_5J7L_070
NA
J3_6ERI_0111/AA/2312:2314,
1/AA/2338:2340,
1/AA/2349:2354		No text annotation
homologous
J3_4WF9_008
J3_05327.1
J3_6ERI_0121/AA/2534:2537,
1/AA/2562:2564,
1/AA/2578:2584		No text annotation
homologous
J3_7RQB_012
NA
J3_6ERI_0131/AA/2807:2808,
1/AB/2:7,
1/AB/93:98		No text annotation
J3_6ERI_0141/AB/10:12,
1/AB/26:40,
1/AB/86:90		No text annotation
J3_6ERI_0151/Ax/11:16,
1/Ax/68:69,
1/Ax/108:110		No text annotation
J3_6ERI_0161/BA/48:49,
1/BA/333:339,
1/BA/365:367		No text annotation
homologous
J3_5J7L_001
NA
J3_6ERI_0351/BA/48:54,
1/BA/331:339,
1/BA/365:367		No text annotation
homologous
J3_4LFB_014
J3_63856.1
J3_6ERI_0171/BA/535:537,
1/BA/600:604,
1/BA/700:704		No text annotation
homologous
J3_5J7L_051
NA
J3_6ERI_0181/BA/621:622,
1/BA/666:674,
1/BA/681:683		No text annotation
homologous
J3_5J7L_003
NA
J3_6ERI_0191/BA/775:778,
1/BA/807:811,
1/BA/818:824		No text annotation
homologous
J3_5J7L_004
NA
J3_6ERI_0201/BA/886:889,
1/BA/1293:1299,
1/BA/1322:1329		No text annotation
homologous
J3_4LFB_002
J3_85722.1
J3_6ERI_0211/BA/893:896,
1/BA/1184:1186,
1/BA/1286:1289		No text annotation
homologous
J3_4LFB_003
J3_44359.1
J3_6ERI_0221/BA/905:912,
1/BA/923:934,
1/BA/1170:1174		No text annotation
homologous
J3_4LFB_004
J3_88451.1
J3_6ERI_0231/BA/940:943,
1/BA/995:997,
1/BA/1159:1164		No text annotation
homologous
J3_4LFB_005
J3_84394.1
J3_6ERI_0361/BA/940:947,
1/BA/994:997,
1/BA/1159:1164		No text annotation
homologous
J3_4LFB_016
J3_28881.1
J3_6ERI_0251/BA/1013:1018,
1/BA/1057:1063,
1/BA/1136:1142		No text annotation
homologous
J3_5J7L_008
NA
J3_6ERI_0391/BA/1023:1024,
1/BA/1033:1036,
1/BA/1049:1052		No text annotation
homologous
J3_4LFB_017
J3_11018.1
J3_6ERI_0271/BA/1066:1069,
1/BA/1103:1107,
1/BA/1130:1133		No text annotation
J3_6ERI_0381/BA/1066:1069,
1/BA/1103:1111,
1/BA/1123:1133		No text annotation
J3_6ERI_0281/BA/1186:1190,
1/BA/1245:1252,
1/BA/1283:1286		No text annotation
homologous
J3_4LFB_009
J3_03192.1
J4_6ERI_0011/AA/253:254,
1/AA/382:387,
1/AA/411:418,
1/AA/433:436		No text annotation
homologous
J4_5J7L_018
NA
J4_6ERI_0021/AA/307:311,
1/AA/325:328,
1/AA/332:334,
1/AA/346:350		No text annotation
homologous
J4_7A0S_002
J4_16174.1
J4_6ERI_0031/AA/611:614,
1/AA/636:640,
1/AA/647:650,
1/AA/662:667		No text annotation
J4_6ERI_0041/AA/1291:1297,
1/AA/1315:1316,
1/AA/1681:1684,
1/AA/2023:2024		No text annotation
homologous
J4_7A0S_004
J4_64571.6
J4_6ERI_0051/AA/1331:1335,
1/AA/1359:1364,
1/AA/1425:1426,
1/AA/1633:1640		No text annotation
homologous
J4_4WF9_005
J4_77353.1
J4_6ERI_0061/AA/1334:1335,
1/AA/1359:1364,
1/AA/1425:1426,
1/AA/1633:1639		No text annotation
homologous
J4_4WF9_006
J4_48150.1
J4_6ERI_0071/AA/1465:1466,
1/AA/1485:1486,
1/AA/1559:1560,
1/AA/1580:1581		No text annotation
homologous
J4_5J7L_024
NA
J4_6ERI_0081/AA/1782:1786,
1/AA/1798:1802,
1/AA/1837:1840,
1/AA/1989:1993		No text annotation
homologous
J4_5J7L_025
NA
J4_6ERI_0091/AA/1843:1845,
1/AA/1919:1920,
1/AA/1938:1947,
1/AA/1981:1986		No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_6ERI_0101/AA/2302:2306,
1/AA/2360:2364,
1/AA/2387:2389,
1/AA/2398:2400		No text annotation
homologous
J4_9DFE_009
J4_98139.1
J4_6ERI_0111/AA/2660:2663,
1/AA/2691:2693,
1/AA/2749:2752,
1/AA/2787:2789		No text annotation
J4_6ERI_0121/BA/100:107,
1/BA/211:212,
1/BA/258:261,
1/BA/283:284		No text annotation
homologous
J4_4LFB_001
J4_90044.1
J4_6ERI_0131/BA/127:129,
1/BA/163:168,
1/BA/177:182,
1/BA/191:193		No text annotation
homologous
J4_5J7L_002
NA
J4_6ERI_0141/BA/524:526,
1/BA/713:718,
1/BA/759:770,
1/BA/829:830		No text annotation
homologous
J4_5J7L_003
NA
J5_6ERI_0011/AA/46:53,
1/AA/114:119,
1/AA/128:129,
1/AA/132:135,
1/AA/161:163		No text annotation
J5_6ERI_0021/AA/253:258,
1/AA/269:276,
1/AA/381:387,
1/AA/411:418,
1/AA/433:436		No text annotation
J5_6ERI_0031/AA/542:544,
1/AA/570:574,
1/AA/587:589,
1/AA/1282:1283,
1/AA/2031:2032		No text annotation
homologous
J5_9DFE_003
J5_43153.6
J5_6ERI_0041/AA/594:599,
1/AA/679:682,
1/AA/820:823,
1/AA/1216:1217,
1/AA/1271:1277		No text annotation
homologous
J5_4WF9_004
J5_74302.6
J5_6ERI_0051/AA/1710:1718,
1/AA/1742:1743,
1/AA/1761:1762,
1/AA/1766:1774,
1/AA/2002:2004		No text annotation
homologous
J5_5J7L_016
NA
J5_6ERI_0101/AA/2071:2078,
1/AA/2463:2470,
1/AA/2517:2523,
1/AA/2600:2605,
1/AA/2623:2628		No text annotation
J5_6ERI_0071/AA/2088:2091,
1/AA/2260:2263,
1/AA/2275:2276,
1/AA/2298:2299,
1/AA/2444:2452		No text annotation
homologous
J5_4WF9_007
J5_39529.2
J5_6ERI_0081/BA/38:41,
1/BA/375:378,
1/BA/408:413,
1/BA/442:449,
1/BA/494:497		No text annotation
J5_6ERI_0091/BA/60:63,
1/BA/91:98,
1/BA/286:288,
1/BA/309:311,
1/BA/322:326		No text annotation
homologous
J5_5J7L_003
NA
J6_6ERI_0011/AA/44:46,
1/AA/163:168,
1/AA/199:209,
1/AA/216:220,
1/AA/247:251,
1/AA/438:445		No text annotation
J7_6ERI_0011/AA/5:15,
1/AA/535:542,
1/AA/2032:2037,
1/AA/2054:2057,
1/AA/2642:2647,
1/AA/2806:2807,
1/AB/98:101		No text annotation
J7_6ERI_0021/AA/828:833,
1/AA/846:847,
1/AA/971:974,
1/AA/999:1004,
1/AA/1015:1019,
1/AA/1190:1191,
1/AA/1206:1211		No text annotation

Problematic loops

#loop idProblemSequence
J3_6ERI_006No text annotation
J3_6ERI_037No text annotation
J3_6ERI_024No text annotation
J3_6ERI_026No text annotation
J5_6ERI_006No text annotation

Coloring options:
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