HL_6ERI_006

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6ERI|1|AA|A|181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_006 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.0894

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6ERI|1|AA|G|179
6ERI|1|AA|A|180
6ERI|1|AA|A|181
6ERI|1|AA|A|182
6ERI|1|AA|C|183
6ERI|1|AA|A|184
6ERI|1|AA|U|185
6ERI|1|AA|C|186

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AL

50S ribosomal protein L15, chloroplastic

Chain AX

50S ribosomal protein L28, chloroplastic