HL_6ERI_009

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_009 not in the Motif Atlas

Geometric match to HL_1RLG_002

Geometric discrepancy: 0.1204

The information below is about HL_1RLG_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6ERI|1|AA|U|261
6ERI|1|AA|G|262
6ERI|1|AA|A|263
6ERI|1|AA|A|264
6ERI|1|AA|A|265
6ERI|1|AA|A|266

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AX

50S ribosomal protein L28, chloroplastic