HL_6ERI_021

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUCAUAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_021 not in the Motif Atlas

Homologous match to HL_9DFE_019

Geometric discrepancy: 0.1756

The information below is about HL_9DFE_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

6ERI|1|AA|U|653
6ERI|1|AA|U|654
6ERI|1|AA|C|655
6ERI|1|AA|A|656
6ERI|1|AA|U|657
6ERI|1|AA|A|658
6ERI|1|AA|G|659

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AL

50S ribosomal protein L15, chloroplastic

Chain Ab

50S ribosomal protein L33, chloroplastic

Chain Ad

50S ribosomal protein L35, chloroplastic