HL_6ERI_042

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6ERI|1|AA|A|1650, 6ERI|1|AA|A|1652, 6ERI|1|AA|A|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_042 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.127

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6ERI|1|AA|C|1648
6ERI|1|AA|G|1649
6ERI|1|AA|A|1650
6ERI|1|AA|C|1651
6ERI|1|AA|A|1652
6ERI|1|AA|C|1653
6ERI|1|AA|A|1654
6ERI|1|AA|G|1655

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AS

50S ribosomal protein L22, chloroplastic

Chain Ac

50S ribosomal protein L34, chloroplastic